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The epidemiology ontology: an ontology for the semantic annotation of epidemiological resources

机译:流行病学本体论:流行病学资源语义标注的本体论

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Background Epidemiology is a data-intensive and multi-disciplinary subject, where data integration, curation and sharing are becoming increasingly relevant, given its global context and time constraints. The semantic annotation of epidemiology resources is a cornerstone to effectively support such activities. Although several ontologies cover some of the subdomains of epidemiology, we identified a lack of semantic resources for epidemiology-specific terms. This paper addresses this need by proposing the Epidemiology Ontology (EPO) and by describing its integration with other related ontologies into a semantic enabled platform for sharing epidemiology resources. Results The EPO follows the OBO Foundry guidelines and uses the Basic Formal Ontology (BFO) as an upper ontology. The first version of EPO models several epidemiology and demography parameters as well as transmission of infection processes, participants and related procedures. It currently has nearly 200 classes and is designed to support the semantic annotation of epidemiology resources and data integration, as well as information retrieval and knowledge discovery activities. Conclusions EPO is under active development and is freely available at https://code.google.com/p/epidemiology-ontology/ webcite. We believe that the annotation of epidemiology resources with EPO will help researchers to gain a better understanding of global epidemiological events by enhancing data integration and sharing.
机译:背景流行病学是一个数据密集和多学科的学科,鉴于其全球背景和时间限制,数据集成,管理和共享正变得越来越重要。流行病学资源的语义注释是有效支持此类活动的基石。尽管几种本体论涵盖了流行病学的某些子领域,但我们发现缺少流行病学特定术语的语义资源。本文通过提出流行病学本体论(EPO)并描述其与其他相关本体论集成到共享流行病学资源的语义支持平台中来解决此需求。结果EPO遵循OBO Foundry指南,并使用基本形式本体(BFO)作为上层本体。 EPO的第一个版本模拟了几种流行病学和人口统计学参数以及传染过程,参与者和相关程序的传播。它目前有近200个类别,旨在支持流行病学资源的语义注释和数据集成,以及信息检索和知识发现活动。结论EPO正在积极开发中,可从https://code.google.com/p/epidemiology-ontology/ webcite免费获得。我们相信,使用EPO注释流行病学资源将通过增强数据集成和共享来帮助研究人员更好地了解全球流行病学事件。

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