...
首页> 外文期刊>Standards in Genomic Sciences >High-quality draft genome sequence of Aquidulcibacter paucihalophilus TH1–2 T isolated from cyanobacterial aggregates in a eutrophic lake
【24h】

High-quality draft genome sequence of Aquidulcibacter paucihalophilus TH1–2 T isolated from cyanobacterial aggregates in a eutrophic lake

机译:从富营养化湖泊中的蓝细菌聚集体中分离出优质嗜水梭状芽胞杆菌TH1-2 T的高质量基因组序列

获取原文
           

摘要

Aquidulcibacter paucihalophilus TH1–2T is a member of the family Caulobacteraceae within Alphaproteobacteria isolated from cyanobacterial aggregates in a eutrophic lake. The draft genome comprises 3,711,627?bp and 3489 predicted protein-coding genes. The genome of strain TH1–2T has 270 genes encoding peptidases. And metallo and serine peptidases were found most frequently. A high number of genes encoding carbohydrate active enzymes (141 CAZymes) also present in strain TH1–2T genome. Among CAZymes, 47 glycoside hydrolase families, 37 glycosyl transferase families, 38 carbohydrate esterases families, nine auxiliary activities families, seven carbohydrate-binding modules families, and three polysaccharide lyases families were identified. Accordingly, strain TH1–2T has a high number of transporters (91), the dominated ones are ATP-binding cassette transporters (61) and TonB-dependent transporters (28). Major TBDTs are Group I, which consisted of transporters for various types of dissolved organic matter. These genome features indicate adaption to cyanobacterial aggregates microenvironments.
机译:paucihalophilus水杆菌TH1–2T是Alphaproteobacteria中的Caulobacteraceae科的一员,该细菌是从富营养化湖泊中的蓝细菌聚集体中分离出来的。基因组草图包含3,711,627?bp和3489个预测的蛋白质编码基因。 TH1-2T菌株的基因组有270个编码肽酶的基因。而且金属和丝氨酸肽酶最常见。 TH1-2T菌株的基因组中也存在大量编码碳水化合物活性酶的基因(141个酶)。在CAZymes中,鉴定出47个糖苷水解酶家族,37个糖基转移酶家族,38个碳水化合物酯酶家族,9个辅助活性家族,7个碳水化合物结合模块家族和3个多糖裂解酶家族。因此,菌株TH1-2T具有大量的转运蛋白(91),主要的是ATP结合盒转运蛋白(61)和依赖TonB的转运蛋白(28)。主要的TBDT是第一类,由用于各种类型溶解有机物的转运蛋白组成。这些基因组特征表明对蓝细菌聚集体微环境的适应性。

著录项

相似文献

  • 外文文献
  • 专利
获取原文

客服邮箱:kefu@zhangqiaokeyan.com

京公网安备:11010802029741号 ICP备案号:京ICP备15016152号-6 六维联合信息科技 (北京) 有限公司©版权所有
  • 客服微信

  • 服务号