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首页> 外文期刊>EURASIP journal on bioinformatics and systems biology >Algorithms and Complexity Analyses for Control of Singleton Attractors in Boolean Networks
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Algorithms and Complexity Analyses for Control of Singleton Attractors in Boolean Networks

机译:布尔网络中单子吸引子控制的算法和复杂度分析

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摘要

A Boolean network (BN) is a mathematical model of genetic networks. We propose several algorithms for control of singleton attractors in BN. We theoretically estimate the average-case time complexities of the proposed algorithms, and confirm them by computer experiments. The results suggest the importance of gene ordering. Especially, setting internal nodes ahead yields shorter computational time than setting external nodes ahead in various types of algorithms. We also present a heuristic algorithm which does not look for the optimal solution but for the solution whose computational time is shorter than that of the exact algorithms.
机译:布尔网络(BN)是遗传网络的数学模型。我们提出了几种用于控制BN中单子吸引子的算法。我们从理论上估计所提出算法的平均时间复杂度,并通过计算机实验对其进行确认。结果表明基因排序的重要性。特别是,在各种类型的算法中,提前设置内部节点比提前设置内部节点产生的计算时间短。我们还提出了一种启发式算法,该算法不寻找最优解,而是寻找其计算时间比精确算法短的解决方案。

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