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Identification of ungulates used in a traditional Chinese medicine with DNA barcoding technology

机译:DNA条形码技术鉴定中药中有蹄类动物

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AbstractHorns of Saiga antelope (Saiga tatarica) have always been an ingredient of “Lingyangjiao”, a traditional Chinese medicine (TCM). Persistent hunting for Saiga antelope has already threatened the survival of critical endangered populations in wild. To control the growing pressure, CITES and Chinese government have legislated for monitoring the trade of Saiga horns. However, similar ungulate horns are difficult to identify by their morphological characteristics, which has impeded the law enforcement. Besides Saiga antelope, other seven ungulate species which have similar horns are also sold and marked as “Lingyangjiao” in TCM markets to offset shortage of Saiga antelope horns. Such species are Gazella subgutturosa, Pantholops hodgsonii, Procapra picticaudata, Procapra gutturosa, Procapra przewalskii, Capra hircus, and Ovis aries. Our study aimed at implementing DNA barcoding technology to diagnose Saiga horns and the substitutes. We successfully extracted genomic DNA from horn samples. We recovered COI sequences of 644 bp with specific primers and 349 bp with nested PCR primers designed for degraded horn samples. The mean interspecific genetic distance of data set of the 644-bp full barcodes and the 349-bp mini-barcodes was 14.96% and 15.38%, respectively, and the mean intraspecific distance was 0.24% and 0.20%, respectively. Each species formed independent clades in neighbor-joining (NJ) phylogenetic tree of the two data sets with 99% supporting values, except P. gutturosa and P. przewalskii. The deep genetic distances gap and clear species clades in NJ tree of either full barcodes or mini-barcodes suggest that barcoding technology is an effective tool to diagnose Saiga horns and their substitutes. Barcoding diagnosis protocol developed here will simplify diagnosis of “Lingyangjiao” species and will facilitate conservation of endangered ungulates involved in TCM “Lingyangjiao” markets, especially the Saiga antelope.
机译:摘要赛加羚羊(Saiga tatarica)的角一直是中药“ Lingyangjiao”的成分。持续猎杀赛加羚羊已经威胁到野生濒危物种的生存。为了控制日益增长的压力,濒危野生动植物种国际贸易公约和中国政府已立法监测赛加羚羊角的贸易。然而,类似的有蹄类动物的角很难通过它们的形态特征来识别,这阻碍了执法。除了赛加羚羊角以外,在中药市场上还出售了其他七个角相似的有蹄类动物,并标记为“ Lingyangjiao”,以弥补赛加羚羊角的短缺。这样的物种是亚细亚瞪羚(Gazella subgutturosa),霍乱索氏猪笼草(Pantholops hodgsonii),pic藜Procapra picticaudata,g藜Procapra przewalskii,ut藜Capcap hircus和羊角Ovis。我们的研究旨在实施DNA条形码技术来诊断赛加羚羊角及其替代品。我们成功地从牛角样本中提取了基因组DNA。我们使用特异引物回收了644bp的COI序列,并使用了针对降解的角样品设计的巢式PCR引物回收了349bp的COI序列。 644 bp完整条形码和349 bp迷你条形码的数据集的平均种间遗传距离分别为14.96%和15.38%,平均种内距离分别为0.24%和0.20%。每个物种在两个数据集的邻域连接(NJ)的系统树中形成独立的进化枝,支持率大于99%,除了古特氏疟原虫和普氏原羚。完整条形码或小型条形码的NJ树中深厚的遗传距离缺口和清晰的物种进化枝表明,条形码技术是诊断赛加羚羊角及其替代品的有效工具。此处开发的条形码诊断协议将简化“ Lingyangjiao”物种的诊断,并有助于保护涉嫌中草药“ Lingyangjiao”市场的有蹄类动物,特别是赛加羚羊。

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