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Utilizing herbarium specimens to quantify historical mycorrhizal communities

机译:利用植物标本室标本量化历史菌根群落

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Premise of the Study Mycorrhiza are critical to ecosystem functioning, but a lack of historical baseline data limits our understanding of the long‐term belowground effects of global change. Herbarium specimens may provide this needed insight. However, it is unknown whether DNA of arbuscular mycorrhizal fungi (AMF) can be reliably extracted from vascular plant specimen roots. Methods We sampled roots from herbarium specimens of four herbaceous forest species collected in western Pennsylvania between 1881–2008. Using molecular methods (terminal restriction fragment length polymorphism and sequence analysis), we quantified AMF communities from specimen roots and tested for contamination. Results We successfully amplified AMF DNA from 44% (21/48) of the root but not leaf samples, indicating specimen contamination was negligible. As expected, there were significant differences in AMF composition between plant species ( P 0.05). However, no differences in AMF communities were detected through time, possibly due to limited sample size and low amplification rates in recent collections. Discussion Herbaria have potential as sources of valuable belowground microbial data to answer questions across geographic, temporal, and taxonomic scales otherwise not feasible. Ongoing methodological developments will only magnify this potential. Further tests are needed to determine curatorial practices that maximize this innovative use of herbarium specimens.
机译:研究的前提菌根对于生态系统的功能至关重要,但是缺乏历史基线数据限制了我们对全球变化的长期地下影响的理解。植物标本室标本可能提供此需要的见识。然而,未知能否从维管束植物标本根中可靠地提取出丛枝菌根真菌(AMF)的DNA。方法我们从1881年至2008年间在宾夕法尼亚州西部采集的四种草本林种的植物标本室标本中取样。使用分子方法(末端限制性片段长度多态性和序列分析),我们从标本根部定量了AMF群落并进行了污染测试。结果我们成功地从44%(21/48)的根样品中扩增了AMF DNA,但没有从叶样品中扩增出AMF DNA,表明样品污染可忽略不计。正如预期的那样,植物物种之间的AMF组成存在显着差异(P <0.05)。但是,随着时间的推移,未检测到AMF群落的差异,这可能是由于近期采集的样本数量有限且扩增率较低所致。讨论草Herb作为潜在的地下微生物数据的来源,有可能回答跨地理,时间和分类尺度的问题,否则将不可行。正在进行的方法学发展只会放大这种潜力。需要进一步的测试以确定策展实践,以最大限度地利用这种创新性的植物标本室标本。

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