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Decision Trees as a Tool to Select Sugarcane Families

机译:决策树作为选择甘蔗家族的工具

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New strategies are required in the sugarcane selection process to optimize the genetic gains in breeding programs. Conventional selection strategies have the disadvantage of requiring the weighing of all the plants in a plot or a sample of stalks and the counting of the number of stalks in all the experimental plots, which cannot always be performed because more than 200,000 genotypes routinely comprise the first test phase (T1) of most sugarcane breeding programs. One way to circumvent this problem is to use decision trees to rank the yield components (the stalk height, the stalk diameter and the number of stalks) and to subsequently use this categorization to select the best families for a specific trait. The objective of this study was to evaluate the categorization of yield components using the classification and regression tree (CART) algorithm as a family selection strategy by comparing the performance of CART with those of conventional methods that require the weighing of stalks, such as the best linear unbiased prediction (BLUP) with sequential (BLUPS) or individual simulated (BLUPIS) procedures. Data from five experiments performed in May 2007 in a randomized block design were analyzed. Each experiment consisted of five blocks, 22 families and two controls (commercial varieties). CART effectively defined the classes of the yield components and selected the best families with an accuracy of 74% compared to BLUPS and BLUPIS. Families with at least 11 stalks per linear meter of furrow resulted in productivities that were above the average productivity of the commercial varieties used in this study and are, therefore, recommended for selection.
机译:在甘蔗选择过程中需要新的策略来优化育种程序中的遗传增益。传统的选择策略的缺点是需要对一个样地或秸秆样品中的所有植物进行称重,并在所有实验样地中对秸秆的数量进行计数,因为总有超过200,000个基因型通常包含第一个基因型,因此无法始终执行大多数甘蔗育种计划的测试阶段(T1)。规避此问题的一种方法是使用决策树对产量成分(茎高,茎直径和茎数)进行排名,然后使用此分类为特定性状选择最佳家族。这项研究的目的是通过将CART的性能与需要权衡秸秆的常规方法(例如最佳方法)的性能进行比较,从而使用分类和回归树(CART)算法作为系列选择策略来评估产量成分的分类。具有顺序(BLUPS)或单个模拟(BLUPIS)程序的线性无偏预测(BLUP)。分析了2007年5月在随机区组设计中进行的五个实验的数据。每个实验由五个区,22个家庭和两个对照(商业品种)组成。与BLUPS和BLUPIS相比,CART有效地定义了产量组成部分的类别,并以74%的准确性选择了最佳家族。每线性米沟至少有11根茎的家庭,其生产力要高于本研究中使用的商业品种的平均生产力,因此建议选择。

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