Distribution and fraction of heavy metals (Pb, Cr, Zn, and Mn) in water and sediment in Liangtan River, Chongqing was analyzed using the atomic absorption spectrometry method. Pearson correlation coefficient, bioavailability index, geoaccumulation index and potential ecological risk index were introduced to classify the source and assess the environmental risk of the heavy metal. Pb, Cr, and Zn mainly existed in residual fraction and fraction bounded to Fe–Mn oxides while Mn mainly existed in the fraction bounded to carbonates and the residual fraction. Mn and Pb, Zn and Cr in the sediment were confirmed originating from, separate common sources. I _(geo) and were both in the order of Pb??Zn??Cr??Mn. Geoaccumulation indexes demonstrated that the Liangtan River has been heavily polluted by Pb and Zn with the class of 2–4 and 2–3, independently. From viewpoint of the whole Liangtan River, the mean RI (45.1) belonged to low risk level.
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