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首页> 外文期刊>Cancer Medicine >Molecular profiles of tumor contrast enhancement: A radiogenomic analysis in anaplastic gliomas
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Molecular profiles of tumor contrast enhancement: A radiogenomic analysis in anaplastic gliomas

机译:肿瘤对比增强的分子谱:间变性胶质瘤的放射基因组学分析

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摘要

The presence of contrast enhancement (CE) on magnetic resonance (MR) imaging is conventionally regarded as an indicator for tumor malignancy. However, the biological behaviors and molecular mechanism of enhanced tumor are not well illustrated. The aim of this study was to investigate the molecular profiles associated with anaplastic gliomas (AGs) presenting CE on postcontrast T1‐weighted MR imaging. In this retrospective database study, RNA sequencing and MR imaging data of 91 AGs from the Cancer Genome Atlas (TCGA) and 64 from the Chinese Glioma Genome Atlas (CGGA) were collected. Gene set enrichment analysis (GSEA), significant analysis of microarray, generalized linear models, and Least absolute shrinkage and selection operator algorithm were used to explore radiogenomic and prognostic signatures of AG patients. GSEA indicated that angiogenesis and epithelial‐mesenchymal transition were significantly associated with post‐CE. Genes driving immune system response, cell proliferation, and focal adhesions were also significantly enriched. Gene ontology of 237 differential genes indicated consistent results. A 48‐gene signature for CE was identified in TCGA and validated in CGGA dataset (area under the curve?=?0.9787). Furthermore, seven genes derived from the CE‐specific signature could stratify AG patients into two subgroups based on overall survival time according to corresponding risk score. Comprehensive analysis of post‐CE and genomic characteristics leads to a better understanding of radiology‐pathology correlations. Our gene signature helps interpret the occurrence of radiological traits and predict clinical outcomes. Additionally, we found nine prognostic quantitative radiomic features of CE and investigated the underlying biological processes of them.
机译:常规地,在磁共振(MR)成像上造影剂增强(CE)的存在被认为是肿瘤恶性的指标。然而,增强的肿瘤的生物学行为和分子机制没有很好地说明。这项研究的目的是调查与在造影剂T1加权MR成像中显示CE的间变性胶质瘤(AG)相关的分子谱。在这项回顾性数据库研究中,收集了来自癌症基因组图谱(TCGA)的91个AG和中国神经胶质瘤基因组图谱(CGGA)的64个AG的RNA测序和MR成像数据。基因集富集分析(GSEA),微阵列显着分析,广义线性模型以及最小绝对收缩和选择算子算法用于探讨AG患者的放射基因组学和预后特征。 GSEA表明,血管生成和上皮-间质转化与CE后显着相关。驱动免疫系统反应,细胞增殖和粘着斑的基因也显着丰富。 237个差异基因的基因本体论表明了一致的结果。在TCGA中鉴定出CE的48个基因签名,并在CGGA数据集中进行了验证(曲线下的面积= 0.9787)。此外,根据相应的风险评分,根据总生存时间,从CE特异特征获得的7个基因可以将AG患者分为两个亚组。对CE后和基因组特征的全面分析有助于更好地了解放射学与病理学的相关性。我们的基因签名有助于解释放射学特征的发生并预测临床结果。此外,我们发现了CE的9种预后定量放射学特征,并研究了它们的潜在生物学过程。

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