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TRIQ: a new method to evaluate triclusters

机译:TRIQ:一种评估三角洲的新方法

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Triclustering has shown to be a valuable tool for the analysis of microarray data since its appearance as an improvement of classical clustering and biclustering techniques. The standard for validation of triclustering is based on three different measures: correlation, graphic similarity of the patterns and functional annotations for the genes extracted from the Gene Ontology project (GO). We propose TRIQ, a single evaluation measure that combines the three measures previously described: correlation, graphic validation and functional annotation, providing a single value as result of the validation of a tricluster solution and therefore simplifying the steps inherent to research of comparison and selection of solutions. TRIQ has been applied to three datasets already studied and evaluated with single measures based on correlation, graphic similarity and GO terms. Triclusters have been extracted from this three datasets using two different algorithms: TriGen and OPTricluster. TRIQ has successfully provided the same results as a the three single evaluation measures. Furthermore, we have applied TRIQ to results from another algorithm, OPTRicluster, and we have shown how TRIQ has been a valid tool to compare results from different algorithms in a quantitative straightforward manner. Therefore, it appears as a valid measure to represent and summarize the quality of tricluster solutions. It is also feasible for evaluation of non biological triclusters, due to the parametrization of each component of TRIQ.
机译:Triclustering已显示是分析微阵列数据的有价值的工具,因为它是对经典聚​​类和双聚类技术的改进。三角洲验证的标准基于三种不同的度量:从基因本体论项目(GO)提取的基因的相关性,图案的图形相似性和功能注释。我们提出了TRIQ,这是一种单一的评估措施,它结合了前面描述的三种措施:相关性,图形验证和功能注释,作为对tricluster解决方案进行验证的结果提供了一个单一的值,因此简化了比较和选择研究的固有步骤。解决方案。 TRIQ已应用于基于相关性,图形相似性和GO项的单一测量已研究和评估的三个数据集。已使用两种不同的算法从这三个数据集中提取了Triclusters:TriGen和OPTricluster。 TRIQ已成功提供了与三个单一评估措施相同的结果。此外,我们已经将TRIQ应用于另一种算法OPTRicluster的结果,并且已经展示了TRIQ如何成为一种有效的工具,可以以定量直接的方式比较不同算法的结果。因此,它似乎是表示和总结三角洲解决方案质量的有效措施。由于TRIQ的每个组成部分都进行了参数化,因此对于评估非生物三角胶也是可行的。

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