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Run-Time Interoperability Between Neuronal Network Simulators Based on the MUSIC Framework

机译:基于MUSIC框架的神经元网络模拟器之间的运行时互操作性

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摘要

MUSIC is a standard API allowing large scale neuron simulators to exchange data within a parallel computer during runtime. A pilot implementation of this API has been released as open source. We provide experiences from the implementation of MUSIC interfaces for two neuronal network simulators of different kinds, NEST and MOOSE. A multi-simulation of a cortico-striatal network model involving both simulators is performed, demonstrating how MUSIC can promote inter-operability between models written for different simulators and how these can be re-used to build a larger model system. Benchmarks show that the MUSIC pilot implementation provides efficient data transfer in a cluster computer with good scaling. We conclude that MUSIC fulfills the design goal that it should be simple to adapt existing simulators to use MUSIC. In addition, since the MUSIC API enforces independence of the applications, the multi-simulation could be built from pluggable component modules without adaptation of the components to each other in terms of simulation time-step or topology of connections between the modules.>Electronic Supplementary Material The online version of this article (doi:10.1007/s12021-010-9064-z) contains supplementary material, which is available to authorized users.
机译:MUSIC是标准API,允许大型神经元模拟器在运行时在并行计算机内交换数据。此API的试验实现已作为开源发布。我们为两个不同类型的神经网络仿真器(NEST和MOOSE)的MUSIC接口实现提供了经验。对涉及两个模拟器的皮质-纹状体网络模型进行了多重仿真,展示了MUSIC如何促进为不同模拟器编写的模型之间的互操作性,以及如何将它们重用于构建更大的模型系统。基准测试表明,MUSIC试点实施可在具有良好扩展能力的群集计算机中提供有效的数据传输。我们得出的结论是,MUSIC达到了设计目标,即使现有的模拟器易于使用MUSIC应当很简单。此外,由于MUSIC API强制了应用程序的独立性,因此可以从可插拔的组件模块构建多重仿真,而无需在仿真时间步长或模块之间的连接拓扑方面使组件彼此适应。>电子补充材料本文的在线版本(doi:10.1007 / s12021-010-9064-z)包含补充材料,授权用户可以使用。

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