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Comparison method for community detection on brain networks from neuroimaging data

机译:从神经影像数据对脑网络进行社区检测的比较方法

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摘要

The brain is a complex system consisting of regions dedicated to different brain functions, and higher cognitive functions are realized via information flow between distant brain areas communicating with each other. As such, it is natural to shift towards brain network analysis from mapping of brain functions, for deeper understanding of the brain system. The graph theoretical network metrics measure global or local properties of network topology, but they do not provide any information about the intermediate scale of the network. Community structure analysis is a useful approach to investigate the mesoscale organization of brain network. However, the community detection schemes are yet to be established.In this paper, we propose a method to compare different community detection schemes for neuroimaging data from multiple subjects. To the best of our knowledge, our method is the first attempt to evaluate community detection from multiple-subject data without “ground truth” community and any assumptions about the original network features. To show its feasibility, three community detection algorithms and three different brain atlases were examined using resting-state fMRI functional networks. As it is crucial to find a single group-based community structure as a representative for a group of subjects to allow discussion about brain areas and connections in different conditions on common ground, a number of community detection schemes based on different approaches have been proposed. A non-parametric permutation test on similarity between group-based community structures and individual community structures was used to determine which algorithm or atlas provided the best representative structure of the group. The Normalized Mutual Information (NMI) was computed to measure the similarity between the community structures. We also discuss further issues on community detection using the proposed method.
机译:大脑是一个复杂的系统,由专用于不同大脑功能的区域组成,而更高的认知功能是通过相互交流的遥远大脑区域之间的信息流来实现的。因此,从对大脑功能的映射转向大脑网络分析是很自然的事,以更深入地了解大脑系统。图形理论网络度量标准可以度量网络拓扑的全局或局部属性,但它们不提供有关网络中间规模的任何信息。社区结构分析是研究大脑网络中尺度组织的有用方法。然而,社区检测方案尚待建立。本文提出了一种比较来自多个对象的神经影像数据的不同社区检测方案的方法。据我们所知,我们的方法是首次尝试从多主题数据中评估社区检测,而没有“地面真理”社区和有关原始网络功能的任何假设。为了显示其可行性,使用静止状态功能磁共振成像功能网络检查了三种社区检测算法和三种不同的大脑图谱。由于找到一个单一的基于群体的社区结构作为一组受试者的代表以允许讨论共同条件下不同条件下的大脑区域和连接至关重要,因此提出了许多基于不同方法的社区检测方案。使用基于群体的社区结构与单个社区结构之间的相似性的非参数置换测试来确定哪种算法或地图集提供了该群体的最佳代表性结构。计算归一化的共同信息(NMI)以衡量社区结构之间的相似性。我们还将讨论使用提议的方法进行社区检测的其他问题。

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