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Extending Causality Tests with Genetic Instruments: An Integration of Mendelian Randomization with the Classical Twin Design

机译:用遗传仪器扩展因果检验:孟德尔随机化与经典双胞胎设计的结合

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摘要

Although experimental studies are regarded as the method of choice for determining causal influences, these are not always practical or ethical to answer vital questions in health and social research (e.g., one cannot assign individuals to a “childhood trauma condition” in studying the causal effects of childhood trauma on depression). Key to solving such questions are observational studies. Mendelian Randomization (MR) is an influential method to establish causality in observational studies. MR uses genetic variants to test causal relationships between exposures/risk factors and outcomes such as physical or mental health. Yet, individual genetic variants have small effects, and so, when used as instrumental variables, render MR liable to weak instrument bias. Polygenic scores have the advantage of larger effects, but may be characterized by horizontal pleiotropy, which violates a central assumption of MR. We developed the MR-DoC twin model by integrating MR with the Direction of Causation twin model. This model allows us to test pleiotropy directly. We considered the issue of parameter identification, and given identification, we conducted extensive power calculations. MR-DoC allows one to test causal hypotheses and to obtain unbiased estimates of the causal effect given pleiotropic instruments, while controlling for genetic and environmental influences common to the outcome and exposure. Furthermore, the approach allows one to employ strong instrumental variables in the form of polygenic scores, guarding against weak instrument bias, and increasing the power to detect causal effects of exposures on potential outcomes. Beside allowing to test pleiotropy directly, incorporating in MR data collected from relatives provide additional within-family data that resolve additional assumptions like random mating, the absence of the gene-environment interaction/covariance, no dyadic effects. Our approach will enhance and extend MR’s range of applications, and increase the value of the large cohorts collected at twin/family registries as they correctly detect causation and estimate effect sizes even in the presence of pleiotropy.Electronic supplementary materialThe online version of this article (10.1007/s10519-018-9904-4) contains supplementary material, which is available to authorized users.
机译:尽管实验研究被认为是确定因果影响的一种选择方法,但这些方法在回答健康和社会研究中的重要问题时并不总是实用或合乎道德的(例如,在研究因果关系时,不能将个人分配给“儿童创伤状况”)儿童创伤对抑郁症的影响)。解决此类问题的关键是观察研究。孟德尔随机化(MR)是在观察研究中建立因果关系的一种有影响的方法。 MR使用遗传变异来测试暴露/风险因素与结果(例如身体或精神健康)之间的因果关系。但是,单个的遗传变异影响很小,因此,当用作工具变量时,MR容易受到仪器偏差的影响。多基因评分具有较大影响的优势,但其特点可能是水平多效性,这违反了MR的主要假设。我们通过将MR与“因果关系”孪生模型集成在一起,开发了MR-DoC孪生模型。该模型使我们可以直接测试多效性。我们考虑了参数识别的问题,并根据识别结果进行了广泛的功率计算。 MR-DoC可以测试因果假设,并在使用多效仪器的情况下获得因果效应的无偏估计,同时控制结果和暴露所共有的遗传和环境影响。此外,该方法允许人们采用多基因评分形式的强大工具变量,防止弱小的工具偏见,并提高检测暴露对潜在结果的因果关系的能力。除了可以直接测试多效性外,从亲戚那里收集的MR数据中还提供了其他家族内数据,这些数据可以解决其他假设,例如随机交配,基因与环境之间的相互作用/协方差,无二分法效应。我们的方法将扩大和扩展MR的应用范围,并增加在双胞胎/家族登记处收集的大型队列的价值,因为它们即使在存在多效性的情况下也能正确检测因果关系并估计效应大小。电子补充材料本文的在线版本( 10.1007 / s10519-018-9904-4)包含补充材料,授权用户可以使用。

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