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A Computer-Based Automated Algorithm for Assessing Acinar Cell Loss after Experimental Pancreatitis

机译:一种基于计算机的自动算法,用于评估实验性胰腺炎后的腺泡细胞损失

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摘要

The change in exocrine mass is an important parameter to follow in experimental models of pancreatic injury and regeneration. However, at present, the quantitative assessment of exocrine content by histology is tedious and operator-dependent, requiring manual assessment of acinar area on serial pancreatic sections. In this study, we utilized a novel computer-generated learning algorithm to construct an accurate and rapid method of quantifying acinar content. The algorithm works by learning differences in pixel characteristics from input examples provided by human experts. HE-stained pancreatic sections were obtained in mice recovering from a 2-day, hourly caerulein hyperstimulation model of experimental pancreatitis. For training data, a pathologist carefully outlined discrete regions of acinar and non-acinar tissue in 21 sections at various stages of pancreatic injury and recovery (termed the “ground truth”). After the expert defined the ground truth, the computer was able to develop a prediction rule that was then applied to a unique set of high-resolution images in order to validate the process. For baseline, non-injured pancreatic sections, the software demonstrated close agreement with the ground truth in identifying baseline acinar tissue area with only a difference of 1%±0.05% (p = 0.21). Within regions of injured tissue, the software reported a difference of 2.5%±0.04% in acinar area compared with the pathologist (p = 0.47). Surprisingly, on detailed morphological examination, the discrepancy was primarily because the software outlined acini and excluded inter-acinar and luminal white space with greater precision. The findings suggest that the software will be of great potential benefit to both clinicians and researchers in quantifying pancreatic acinar cell flux in the injured and recovering pancreas.
机译:外分泌质量的变化是胰腺损伤和再生实验模型中要遵循的重要参数。然而,目前,通过组织学对外分泌成分的定量评估是繁琐且依赖操作者的,需要手动评估胰腺系列切片的腺泡区域。在这项研究中,我们利用一种新颖的计算机生成的学习算法来构建一种准确而快速的量化腺泡含量的方法。该算法通过从人类专家提供的输入示例中学习像素特征的差异来工作。在从实验性胰腺炎的每天2小时,每小时一次的caerulein超刺激模型中恢复的小鼠中获得HE染色的胰腺切片。为了训练数据,病理学家仔细地概述了在胰腺损伤和恢复的不同阶段的21个切片中腺泡和非腺泡组织的离散区域(称为“地面真相”)。在专家定义了基本事实之后,计算机便能够制定预测规则,然后将该预测规则应用于一组独特的高分辨率图像以验证该过程。对于基线,未损伤的胰腺切片,该软件在识别基线腺泡组织区域方面显示出与地面真相非常一致,相差仅1%±0.05%(p = 0.21)。在受伤组织区域内,软件报告的腺泡面积与病理学家相比差异为2.5%±0.04%(p = 0.47)。出乎意料的是,在详细的形态学检查中,差异主要是因为该软件勾勒出了腺泡,并以更高的精度排除了髋臼间和腔内的空白。研究结果表明,该软件在定量损伤和恢复胰腺中的胰腺腺泡细胞通量方面将对临床医生和研究人员均具有巨大的潜在益处。

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