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Dynamic Regulation of Tgf-B Signaling by Tif1γ: A ComputationalApproach

机译:Tif1γ对Tgf-B信号的动态调节:计算方法

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摘要

TIF1γ (Transcriptional Intermediary Factor 1 γ) has been implicated in Smad-dependent signaling by Transforming Growth Factor beta (TGF-β). Paradoxically, TIF1γ functions both as a transcriptional repressor or as an alternative transcription factor that promotes TGF-β signaling. Using ordinary differential-equation models, we have investigated the effect of TIF1γ on the dynamics of TGF-β signaling. An integrative model that includes the formation of transient TIF1γ-Smad2-Smad4 ternary complexes is the only one that can account for TGF-β signaling compatible with the different observations reported for TIF1γ. In addition, our model predicts that varying TIF1γ/Smad4 ratios play a critical role in the modulation of the transcriptional signal induced by TGF-β, especially for short stimulation times that mediate higher threshold responses. Chromatin immunoprecipitation analyses and quantification of the expression of TGF-β target genes as a function TIF1γ/Smad4 ratios fully validate this hypothesis. Our integrative model, which successfully unifies the seemingly opposite roles of TIF1γ, also reveals how changing TIF1γ/Smad4 ratios affect the cellular response to stimulation by TGF-β, accounting for ahighly graded determination of cell fate.
机译:通过转化生长因子β(TGF-β),TIF1γ(转录中间因子1γ)参与了Smad依赖性信号传导。矛盾的是,TIF1γ既起转录抑制因子的作用,又起促进TGF-β信号传导的替代转录因子的作用。使用普通的微分方程模型,我们研究了TIF1γ对TGF-β信号传导动力学的影响。包括瞬态TIF1γ-Smad2-Smad4三元复合物形成在内的一种集成模型是唯一可以说明TGF-β信号转导与报道的TIF1γ的不同观察结果兼容的模型。此外,我们的模型预测,变化的TIF1γ/ Smad4比值在TGF-β诱导的转录信号的调制中起关键作用,尤其是对于介导较高阈值响应的短刺激时间而言。染色质免疫沉淀分析和作为功能TIF1γ/ Smad4比值的TGF-β靶基因表达的量化充分验证了这一假设。我们的整合模型成功地统一了TIF1γ的看似相反的作用,还揭示了变化的TIF1γ/ Smad4比值如何影响细胞对TGF-β刺激的反应,这说明了高度确定的细胞命运。

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