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Attraction Basins as Gauges of Robustness against Boundary Conditions in Biological Complex Systems

机译:吸引盆地作为生物复杂系统中针对边界条件的鲁棒性度量

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摘要

One fundamental concept in the context of biological systems on which researches have flourished in the past decade is that of the apparent robustness of these systems, i.e., their ability to resist to perturbations or constraints induced by external or boundary elements such as electromagnetic fields acting on neural networks, micro-RNAs acting on genetic networks and even hormone flows acting both on neural and genetic networks. Recent studies have shown the importance of addressing the question of the environmental robustness of biological networks such as neural and genetic networks. In some cases, external regulatory elements can be given a relevant formal representation by assimilating them to or modeling them by boundary conditions. This article presents a generic mathematical approach to understand the influence of boundary elements on the dynamics of regulation networks, considering their attraction basins as gauges of their robustness. The application of this method on a real genetic regulation network will point out a mathematical explanation of a biological phenomenon which has only been observed experimentally until now, namely the necessity of the presence of gibberellin for the flower of the plant Arabidopsis thaliana to develop normally.
机译:在过去的十年中研究蓬勃发展的生物系统中,一个基本概念是这些系统的表观鲁棒性,即它们具有抵抗外界或边界元素(例如作用于电磁场)引起的摄动或约束的能力。神经网络,作用于遗传网络的微小RNA甚至作用于神经网络和遗传网络的激素流。最近的研究表明,解决诸如神经网络和遗传网络之类的生物网络的环境鲁棒性的重要性。在某些情况下,可以通过将外部监管要素与边界条件同化或通过边界条件对外部监管要素进行相关形式化表示。本文提出了一种通用数学方法,以了解边界元素对调节网络动力学的影响,并将其吸引盆视为其鲁棒性的量度。该方法在实际遗传调控网络上的应用将指出对一种生物学现象的数学解释,该生物学现象直到现在才通过实验观察到,即赤霉素存在对于拟南芥植物花正常发育的必要性。

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