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Classification of Microarray Data Using Kernel Fuzzy Inference System

机译:基于核模糊推理系统的微阵列数据分类

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摘要

The DNA microarray classification technique has gained more popularity in both research and practice. In real data analysis, such as microarray data, the dataset contains a huge number of insignificant and irrelevant features that tend to lose useful information. Classes with high relevance and feature sets with high significance are generally referred for the selected features, which determine the samples classification into their respective classes. In this paper, kernel fuzzy inference system (K-FIS) algorithm is applied to classify the microarray data (leukemia) using t-test as a feature selection method. Kernel functions are used to map original data points into a higher-dimensional (possibly infinite-dimensional) feature space defined by a (usually nonlinear) function ϕ through a mathematical process called the kernel trick. This paper also presents a comparative study for classification using K-FIS along with support vector machine (SVM) for different set of features (genes). Performance parameters available in the literature such as precision, recall, specificity, F-measure, ROC curve, and accuracy are considered to analyze the efficiency of the classification model. From the proposed approach, it is apparent that K-FIS model obtains similar results when compared with SVM model. This is an indication that the proposed approach relies on kernel function.
机译:DNA芯片分类技术在研究和实践中都越来越流行。在真实数据分析(例如微阵列数据)中,数据集包含大量无关紧要的特征,这些特征往往会丢失有用的信息。通常将具有高相关性的类别和具有高重要性的特征集用于所选特征,这些特征确定将样本分类到其各自的类别中。本文采用核模糊推理系统(K-FIS)算法,以t检验作为特征选择方法对芯片数据(白血病)进行分类。内核函数用于通过称为内核技巧的数学过程将原始数据点映射到由(通常是非线性的)函数defined定义的更高维度(可能是无限维)的特征空间。本文还针对使用K-FIS和支持向量机(SVM)进行的不同特征集(基因)分类进行了比较研究。考虑使用文献中可用的性能参数(例如精度,召回率,特异性,F量度,ROC曲线和准确性)来分析分类模型的效率。从提出的方法来看,很明显,与SVM模型相比,K-FIS模型获得了相似的结果。这表明所提出的方法依赖于内核功能。

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