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The UCSC Genome Browser database: 2021 update

机译:UCSC Genome浏览器数据库:2021更新

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摘要

For more than two decades, the UCSC Genome Browser database (https://genome.ucsc.edu) has provided high-quality genomics data visualization and genome annotations to the research community. As the field of genomics grows and more data become available, new modes of display are required to accommodate new technologies. New features released this past year include a Hi-C heatmap display, a phased family trio display for VCF files, and various track visualization improvements. Striving to keep data up-to-date, new updates to gene annotations include GENCODE Genes, NCBI RefSeq Genes, and Ensembl Genes. New data tracks added for human and mouse genomes include the ENCODE registry of candidate cis-regulatory elements, promoters from the Eukaryotic Promoter Database, and NCBI RefSeq Select and Matched Annotation from NCBI and EMBL-EBI (MANE). Within weeks of learning about the outbreak of coronavirus, UCSC released a genome browser, with detailed annotation tracks, for the SARS-CoV-2 RNA reference assembly.
机译:超过二十年,UCSC基因组浏览器数据库(https://genome.ucsc.edu)为研究界提供了高质量的基因组学数据可视化和基因组注释。随着基因组学领域的增长和更多数据可用,需要新的显示模式来适应新技术。这次过去一年发布的新功能包括一个Hi-C热线图显示,一个用于VCF文件的分阶段家庭Trio显示,以及各种轨道可视化改进。努力保持数据最新,Gene注释的新更新包括Gencode基因,NCBI Refseq基因和Ensembl基因。为人和小鼠基因组添加的新数据轨迹包括候选顺式调节元素的编码注册表,来自真核生物启动子数据库的启动子,NCBI Refseq选择和匹配NCBI和Embl-Ebi(MANE)的注释。在学习冠心病爆发的几周内,UCSC为SARS-COV-2 RNA参考组件发布了一个基因组浏览器,详细的注释轨迹。

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