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Deep neural networks for inferring binding sites of RNA-binding proteins by using distributed representations of RNA primary sequence and secondary structure

机译：通过使用RNA初级序列和二级结构的分布式表示用于推断RNA结合蛋白的结合位点的深神经网络

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摘要

The online version contains supplementary material available at (doi:10.1186/s12864-020-07239-w).

机译：在线版包含补充材料（DOI：10.1186 / S12864-020-07239-W）。

著录项

期刊名称 BMC Genomics
作者
Lei Deng; Youzhi Liu; Yechuan Shi; Wenhao Zhang; Chun Yang; Hui Liu;
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作者单位

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年(卷),期 2020(21),Suppl 13
年度 2020
页码 866
总页数 10
原文格式 PDF
正文语种
中图分类遗传学;应用微生物学;
关键词
RNA-binding proteins; Binding sites; Distributed representation; k-mer; Deep learning; Convolutional neural network; Bidirectional long short term memory network;

机译：RNA结合蛋白;结合位点;分布式表示;k-mer;深度学习;卷积神经网络;双向长短期内存网络;

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专利

1. Deep neural networks for inferring binding sites of RNA-binding proteins by using distributed representations of RNA primary sequence and secondary structure [J] . Lei Deng, Youzhi Liu, Yechuan Shi, BMC Genomics . 2020,第13期

机译：通过使用RNA初级序列和二级结构的分布式表示，用于推断RNA结合蛋白的结合位点的深神经网络
2. Learning distributed representations of RNA sequences and its application for predicting RNA-protein binding sites with a convolutional neural network [J] . Pan Xiaoyong, Shen Hong-Bin Neurocomputing . 2018,第AUGa30期

机译：通过卷积神经网络学习RNA序列的分布式表示形式及其在预测RNA-蛋白质结合位点中的应用
3. Conserved Sequences and Secondary RNA Structures Confirm That H19 Functions as a Pri-miRNA and as an RNA-binding Protein Platform [J] . EricJ. Devor, JillianN. De Mik, BrandonM. Schickling The Open Genomics Journal . 2013,第1期

机译：保守序列和二级RNA结构证实H19充当Pri-miRNA和RNA结合蛋白平台。
4. A deep neural network approach using distributed representations of RNA sequence and structure for identifying binding site of RNA-binding proteins [C] . Lei Deng, Youzhi Liu, Yechuan Shi, IEEE International Conference on Bioinformatics and Biomedicine . 2019

机译：使用RNA序列和结构的分布式表示的深层神经网络方法，用于识别RNA结合蛋白的结合位点
5. The C. elegans RNA-binding protein GLD-1 recognizes sequence, structure and context information to repress translation of its mRNA targets [D] . Doh, Jung Hoon. 2012

机译：C. elegans RNA结合蛋白GLD-1识别序列，结构和上下文信息，以抑制其mRNA目标的翻译
6. Predicting in vivo binding sites of RNA-binding proteins using mRNA secondary structure [O] . Xiao Li, Gerald Quon, Howard D. Lipshitz, 2010

机译：使用mRNA二级结构预测RNA结合蛋白的体内结合位点
7. Inferring Sequence-Structure Preferences of RNA-Binding Proteins with Convolutional Residual Networks [O] . Peter K. Koo, Praveen Anand, Steffan B. Paul, 2018

机译：使用卷积剩余网络推断RNA结合蛋白的序列结构偏好

Deep neural networks for inferring binding sites of RNA-binding proteins by using distributed representations of RNA primary sequence and secondary structure

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