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Distributed Computation of the knn Graph for Large High-Dimensional Point Sets

机译:大型高维点集的knn图的分布式计算

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摘要

High-dimensional problems arising from robot motion planning, biology, data mining, and geographic information systems often require the computation of k nearest neighbor (knn) graphs. The knn graph of a data set is obtained by connecting each point to its k closest points. As the research in the above-mentioned fields progressively addresses problems of unprecedented complexity, the demand for computing knn graphs based on arbitrary distance metrics and large high-dimensional data sets increases, exceeding resources available to a single machine. In this work we efficiently distribute the computation of knn graphs for clusters of processors with message passing. Extensions to our distributed framework include the computation of graphs based on other proximity queries, such as approximate knn or range queries. Our experiments show nearly linear speedup with over one hundred processors and indicate that similar speedup can be obtained with several hundred processors.
机译:由机器人运动计划,生物学,数据挖掘和地理信息系统引起的高维问题通常需要计算k个最近邻居(knn)图。数据集的knn图是通过将每个点连接到它的k个最接近点而获得的。随着上述领域的研究逐步解决了前所未有的复杂性问题,基于任意距离度量和大型高维数据集计算knn图的需求不断增加,超出了单台机器可用的资源。在这项工作中,我们通过消息传递为处理器集群有效地分配了knn图的计算。对分布式框架的扩展包括基于其他邻近查询(例如近似knn或范围查询)的图形计算。我们的实验表明,使用100多个处理器,几乎可以实现线性加速,并表明可以使用数百个处理器获得类似的加速。

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