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Controllability in Cancer Metabolic Networks According to Drug Targets as Driver Nodes

机译:根据药物目标为驱动程序节点的癌症代谢网络的可控性

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摘要

Networks are employed to represent many nonlinear complex systems in the real world. The topological aspects and relationships between the structure and function of biological networks have been widely studied in the past few decades. However dynamic and control features of complex networks have not been widely researched, in comparison to topological network features. In this study, we explore the relationship between network controllability, topological parameters, and network medicine (metabolic drug targets). Considering the assumption that targets of approved anticancer metabolic drugs are driver nodes (which control cancer metabolic networks), we have applied topological analysis to genome-scale metabolic models of 15 normal and corresponding cancer cell types. The results show that besides primary network parameters, more complex network metrics such as motifs and clusters may also be appropriate for controlling the systems providing the controllability relationship between topological parameters and drug targets. Consequently, this study reveals the possibilities of following a set of driver nodes in network clusters instead of considering them individually according to their centralities. This outcome suggests considering distributed control systems instead of nodal control for cancer metabolic networks, leading to a new strategy in the field of network medicine.
机译:网络被用来代表现实世界中的许多非线性复杂系统。在过去的几十年中,已经广泛研究了拓扑方面以及生物网络的结构和功能之间的关系。但是,与拓扑网络功能相比,复杂网络的动态和控制功能尚未得到广泛研究。在这项研究中,我们探讨了网络可控性,拓扑参数和网络医学(代谢药物靶标)之间的关系。考虑到已批准的抗癌代谢药物的靶点是驱动程序节点(控制癌症代谢网络)的假设,我们将拓扑分析应用于15种正常和相应癌细胞类型的基因组规模代谢模型。结果表明,除了主要的网络参数外,更复杂的网络指标(例如主题和簇)也可能适用于控制提供拓扑参数和药物目标之间可控关系的系统。因此,本研究揭示了遵循网络群集中的一组驱动程序节点而不是根据其中心点单独考虑它们的可能性。这一结果表明,考虑对癌症代谢网络考虑采用分布式控制系统而不是节点控制,从而导致了网络医学领域的新战略。

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