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Comparing Stochastic Differential Equations and Agent-Based Modelling and Simulation for Early-Stage Cancer

机译:随机微分方程的比较和基于Agent的早期癌症建模与仿真

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摘要

There is great potential to be explored regarding the use of agent-based modelling and simulation as an alternative paradigm to investigate early-stage cancer interactions with the immune system. It does not suffer from some limitations of ordinary differential equation models, such as the lack of stochasticity, representation of individual behaviours rather than aggregates and individual memory. In this paper we investigate the potential contribution of agent-based modelling and simulation when contrasted with stochastic versions of ODE models using early-stage cancer examples. We seek answers to the following questions: (1) Does this new stochastic formulation produce similar results to the agent-based version? (2) Can these methods be used interchangeably? (3) Do agent-based models outcomes reveal any benefit when compared to the Gillespie results? To answer these research questions we investigate three well-established mathematical models describing interactions between tumour cells and immune elements. These case studies were re-conceptualised under an agent-based perspective and also converted to the Gillespie algorithm formulation. Our interest in this work, therefore, is to establish a methodological discussion regarding the usability of different simulation approaches, rather than provide further biological insights into the investigated case studies. Our results show that it is possible to obtain equivalent models that implement the same mechanisms; however, the incapacity of the Gillespie algorithm to retain individual memory of past events affects the similarity of some results. Furthermore, the emergent behaviour of ABMS produces extra patters of behaviour in the system, which was not obtained by the Gillespie algorithm.
机译:关于使用基于代理的建模和模拟作为研究早期癌症与免疫系统相互作用的替代范例的潜力巨大。它不受普通微分方程模型的某些限制,例如缺乏随机性,单个行为的表示而不是合计和单个记忆。在本文中,我们与基于早期癌症实例的ODE模型的随机版本相比,研究了基于代理的建模和仿真的潜在贡献。我们寻求以下问题的答案:(1)这种新的随机公式产生的结果是否类似于基于代理的结果? (2)这些方法可以互换使用吗? (3)与Gillespie结果相比,基于主体的模型结果是否显示出任何好处?为了回答这些研究问题,我们研究了描述肿瘤细胞和免疫元件之间相互作用的三个公认的数学模型。这些案例研究在基于代理的视角下重新概念化,并且也转换为Gillespie算法公式。因此,我们对这项工作的兴趣是建立关于不同模拟方法的可用性的方法论讨论,而不是为所研究的案例研究提供进一步的生物学见解。我们的结果表明,有可能获得实现相同机制的等效模型。但是,Gillespie算法无法保留过去事件的个人记忆会影响某些结果的相似性。此外,ABMS的新出现的行为会在系统中产生额外的行为模式,这不是Gillespie算法获得的。

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