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CellFIT: A Cellular Force-Inference Toolkit Using Curvilinear Cell Boundaries

机译:CellFIT:使用曲线单元边界的细胞力推论工具包

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摘要

Mechanical forces play a key role in a wide range of biological processes, from embryogenesis to cancer metastasis, and there is considerable interest in the intuitive question, “Can cellular forces be inferred from cell shapes?” Although several groups have posited affirmative answers to this stimulating question, nagging issues remained regarding equation structure, solution uniqueness and noise sensitivity. Here we show that the mechanical and mathematical factors behind these issues can be resolved by using curved cell edges rather than straight ones. We present a new package of force-inference equations and assessment tools and denote this new package CellFIT, the Cellular Force Inference Toolkit. In this approach, cells in an image are segmented and equilibrium equations are constructed for each triple junction based solely on edge tensions and the limiting angles at which edges approach each junction. The resulting system of tension equations is generally overdetermined. As a result, solutions can be obtained even when a modest number of edges need to be removed from the analysis due to short length, poor definition, image clarity or other factors. Solving these equations yields a set of relative edge tensions whose scaling must be determined from data external to the image. In cases where intracellular pressures are also of interest, Laplace equations are constructed to relate the edge tensions, curvatures and cellular pressure differences. That system is also generally overdetermined and its solution yields a set of pressures whose offset requires reference to the surrounding medium, an open wound, or information external to the image. We show that condition numbers, residual analyses and standard errors can provide confidence information about the inferred forces and pressures. Application of CellFIT to several live and fixed biological tissues reveals considerable force variability within a cell population, significant differences between populations and elevated tensions along heterotypic boundaries.
机译:机械力在从胚胎发生到癌症转移的广泛生物过程中均起着关键作用,并且人们对“可以从细胞形状中推断出细胞力吗?”这一直觉性问题颇有兴趣。尽管有几个小组对此刺激性问题提出了肯定的答案,但关于方程结构,解决方案唯一性和噪声敏感性的困扰仍然存在。在这里,我们表明,可以通过使用弯曲的单元格边缘而不是笔直的边缘来解决这些问题背后的机械和数学因素。我们提出了一个新的力推论方程式和评估工具包,并表示了这个新的包CellFIT,即细胞力推论工具包。在这种方法中,将图像中的单元进行分割,并仅基于边缘张力和边缘接近每个结点的极限角为每个三重结点构造平衡方程。所得的张力方程系统通常是过高的。结果,即使由于长度短,清晰度差,图像清晰度或其他因素而需要从分析中删除少量边缘时,也可以获得解决方案。求解这些方程式可得到一组相对边缘张力,其相对缩放比例必须根据图像外部数据确定。在细胞内压力也很重要的情况下,构建拉普拉斯方程来关联边缘张力,曲率和细胞压力差。该系统通常也被过度确定,其解决方案会产生一组压力,其偏移需要参考周围的介质,开放的伤口或图像外部的信息。我们表明条件数,残差分析和标准误差可以提供有关推断力和压力的置信度信息。 CellFIT在几种活的和固定的生物组织中的应用揭示了细胞群体内相当大的力可变性,群体之间的显着差异以及沿异型边界的张力升高。

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