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ForceAtlas2 a Continuous Graph Layout Algorithm for Handy Network Visualization Designed for the Gephi Software

机译:ForceAtlas2一种为Gephi软件设计的用于方便网络可视化的连续图布局算法

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摘要

Gephi is a network visualization software used in various disciplines (social network analysis, biology, genomics…). One of its key features is the ability to display the spatialization process, aiming at transforming the network into a map, and ForceAtlas2 is its default layout algorithm. The latter is developed by the Gephi team as an all-around solution to Gephi users’ typical networks (scale-free, 10 to 10,000 nodes). We present here for the first time its functioning and settings. ForceAtlas2 is a force-directed layout close to other algorithms used for network spatialization. We do not claim a theoretical advance but an attempt to integrate different techniques such as the Barnes Hut simulation, degree-dependent repulsive force, and local and global adaptive temperatures. It is designed for the Gephi user experience (it is a continuous algorithm), and we explain which constraints it implies. The algorithm benefits from much feedback and is developed in order to provide many possibilities through its settings. We lay out its complete functioning for the users who need a precise understanding of its behaviour, from the formulas to graphic illustration of the result. We propose a benchmark for our compromise between performance and quality. We also explain why we integrated its various features and discuss our design choices.
机译:Gephi是用于各个学科(社会网络分析,生物学,基因组学…)的网络可视化软件。它的主要功能之一是显示空间化过程的能力,旨在将网络转换成地图,ForceAtlas2是其默认布局算法。后者是由Gephi团队开发的,是针对Gephi用户典型网络(无规模,10到10,000个节点)的全方位解决方案。我们第一次在这里展示其功能和设置。 ForceAtlas2是一种受力控制的布局,与用于网络空间化的其他算法非常接近。我们并没有主张理论上的进步,而是尝试整合不同的技术,例如Barnes Hut模拟,依赖程度的排斥力以及局部和全局自适应温度。它是为Gephi用户体验而设计的(它是一种连续算法),我们将解释它所隐含的约束。该算法受益于大量反馈,因此经过开发,旨在通过其设置提供多种可能性。我们为需要精确了解其行为的用户(从公式到结果的图形说明)提供了完整的功能。我们为性能和质量之间的折衷提出了一个基准。我们还将解释为什么我们集成其各种功能并讨论我们的设计选择。

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