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R package PRIMsrc: Bump Hunting by Patient Rule Induction Method forSurvival Regression and Classification

机译:R软件包PRIMsrc:通过患者规则归纳法进行凹凸不平寻找生存回归和分类

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摘要

PRIMsrc is a novel implementation of a non-parametric bump hunting procedure, based on the Patient Rule Induction Method (PRIM), offering a unified treatment of outcome variables, including censored time-to-event (Survival), continuous (Regression) and discrete (Classification) responses. To fit the model, it uses a recursive peeling procedure with specific peeling criteria and stopping rules depending on the response. To validate the model, it provides an objective function based on prediction-error or other specific statistic, as well as two alternative cross-validation techniques, adapted to the task of decision-rule making and estimation in the three types of settings. PRIMsrc comes as an open source R package, including at this point: (i) a main function for fitting a Survival Bump Hunting model with various options allowing cross-validated model selection to control model size (#covariates) and model complexity (#peeling steps) and generation of cross-validated end-point estimates; (ii) parallel computing; (iii) various S3-generic and specific plotting functions for data visualization, diagnostic, prediction, summary and display of results. It is available on CRANand GitHub.
机译: PRIMsrc 是一种基于患者规则归纳方法(PRIM)的非参数颠簸搜索过程的新颖实现,可对结果变量进行统一处理,包括审查事件发生时间(生存) ,连续(回归)和离散(分类)响应。为了拟合模型,它使用了具有特定剥离标准的递归剥离程序和取决于响应的停止规则。为了验证该模型,它提供了基于预测误差或其他特定统计量的目标函数,以及两种可选的交叉验证技术,这些技术适用于在三种类型的设置中进行决策和估计的任务。 PRIMsrc 作为开源R软件包提供,包括以下几点:(i)一个主要功能,用于拟合具有各种选项的Survival Bump Hunting模型,允许交叉验证模型选择以控制模型大小(#covariates )和模型的复杂性(剥离步骤)以及交叉验证的端点估计的生成; (ii)并行计算; (iii)各种S3通用和特定绘图功能,用于数据可视化,诊断,预测,结果汇总和显示。它在CRAN上可用和GitHub。

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