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On speeding up stochastic simulations by parallelization of random number generation

机译:通过随机数生成的并行化加快随机模拟

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摘要

This paper adds to the tool kit of stochastic simulations based on a very simple idea. Applicable to both SSA and Tau-leap algorithms, it can notably reduce computational times. Stochastic simulations are based on computing sample paths based on the generation of random numbers with either exactly stipulated distribution functions as in SSA () or in the method of interval of quiescence () or distribution functions featuring approximations designed to promote efficiency (as in Tau-leap algorithms (; ; ; ; ) where a leap condition with the parameter epsilon is used). The usual strategy involves sequential computation of a large number of sample paths over a bounded time interval which is covered by a set of discrete time subintervals obtained by random number generation. The strategy here departs from the foregoing by parallelizing the generation of random subintervals for the set of sample paths until all sample paths have been computed for the stated time interval. The advantage of this procedure lies in the fact that the time for initiation of the random number generator has been notably reduced. Many examples are demonstrated from SSA as well as Tau-leap algorithms to establish that the advantage of the approach is much more than conceptual.
机译:本文基于一个非常简单的想法将随机模拟的工具包添加到了工具包中。它同时适用于SSA和Tau-leap算法,可以显着减少计算时间。随机模拟是基于根据随机数的产生来计算样本路径的,该随机数具有SSA()中精确规定的分布函数()或静态间隔()中的方法或具有旨在提高效率的近似值的分布函数(如Tau-飞跃算法(;;;;;),其中使用了带有参数epsilon的飞跃条件。通常的策略涉及在有限的时间间隔内对大量样本路径进行顺序计算,该时间间隔由一组通过随机数生成获得的离散时间子间隔所覆盖。在此,该策略通过并行化针对样本路径集合的随机子间隔的生成,直到在规定的时间间隔内计算了所有样本路径为止,与上述策略有所不同。该过程的优点在于以下事实:显着减少了启动随机数生成器的时间。从SSA以及Tau-leap算法演示了许多示例,以证明该方法的优势远不止概念。

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