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Exploiting the Adaptation Dynamics to Predict the Distribution of Beneficial Fitness Effects

机译:利用适应动力学来预测有益健身效果的分布

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摘要

Adaptation of asexual populations is driven by beneficial mutations and therefore the dynamics of this process, besides other factors, depends on the distribution of beneficial fitness effects. It is known that on uncorrelated fitness landscapes, this distribution can only be of three types: truncated, exponential and power law. We performed extensive stochastic simulations to study the adaptation dynamics on rugged fitness landscapes, and identified two quantities that can be used to distinguish the underlying distribution of beneficial fitness effects. The first quantity studied here is the fitness difference between successive mutations that spread in the population, which is found to decrease in the case of truncated distributions, remains nearly a constant for exponentially decaying distributions and increases when the fitness distribution decays as a power law. The second quantity of interest, namely, the rate of change of fitness with time also shows quantitatively different behaviour for different beneficial fitness distributions. The patterns displayed by the two aforementioned quantities are found to hold good for both low and high mutation rates. We discuss how these patterns can be exploited to determine the distribution of beneficial fitness effects in microbial experiments.
机译:无性种群的适应是由有益突变驱动的,因此,除其他因素外,这一过程的动态还取决于有益适应性效应的分布。众所周知,在不相关的适应度景观上,此分布只能是三种类型:截断,指数和幂定律。我们进行了广泛的随机模拟,以研究在崎fitness不平的健身环境中的适应动力学,并确定了两个可用于区分有益健身效果的潜在分布的量。此处研究的第一个数量是在种群中扩散的连续突变之间的适应度差异,发现该变异在截断分布的情况下减小,对于指数衰减的分布几乎保持恒定,而在适应度分布作为幂律衰减时则增大。感兴趣的第二个数量,即适应度随时间的变化率,还针对不同的有益适应度分布在数量上表现出不同的行为。发现由上述两个量显示的模式对于低突变率和高突变率都保持良好。我们讨论如何利用这些模式来确定有益的健身效果在微生物实验中的分布。

著录项

  • 期刊名称 other
  • 作者

    Sona John; Sarada Seetharaman;

  • 作者单位
  • 年(卷),期 -1(11),3
  • 年度 -1
  • 页码 e0151795
  • 总页数 16
  • 原文格式 PDF
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