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ISAVS: Interactive Scalable Analysis and Visualization System

机译:ISAVS:交互式可伸缩分析和可视化系统

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摘要

Modern science is inundated with ever increasing data sizes as computational capabilities and image acquisition techniques continue to improve. For example, simulations are tackling ever larger domains with higher fidelity, and high-throughput microscopy techniques generate larger data that are fundamental to gather biologically and medically relevant insights. As the image sizes exceed memory, and even sometimes local disk space, each step in a scientific workflow is impacted. Current software solutions enable data exploration with limited interactivity for visualization and analytic tasks. Furthermore analysis on HPC systems often require complex hand-written parallel implementations of algorithms that suffer from poor portability and maintainability.We present a software infrastructure that simplifies end-to-end visualization and analysis of massive data. First, a hierarchical streaming data access layer enables interactive exploration of remote data, with fast data fetching to test analytics on subsets of the data. Second, a library simplifies the process of developing new analytics algorithms, allowing users to rapidly prototype new approaches and deploy them in an HPC setting. Third, a scalable runtime system automates mapping analysis algorithms to whatever computational hardware is available, reducing the complexity of developing scaling algorithms. We demonstrate the usability and performance of our system using a use case from neuroscience: filtering, registration, and visualization of tera-scale microscopy data. We evaluate the performance of our system using a leadership-class supercomputer, Shaheen II.
机译:随着计算能力和图像采集技术的不断提高,现代科学被数据量不断增加所淹没。例如,模拟正以更高的保真度处理更大的领域,而高通量显微镜技术会产生更大的数据,这些数据对于收集生物学和医学相关的见解至关重要。随着映像大小超过内存,甚至有时超过本地磁盘空间,科学工作流程中的每个步骤都会受到影响。当前的软件解决方案能够以有限的交互性进行数据浏览,以进行可视化和分析任务。此外,对HPC系统的分析通常需要复杂的手写并行算法来实现,这些算法的可移植性和可维护性很差。我们提出了一种软件基础架构,可简化海量数据的端到端可视化和分析。首先,分层的流数据访问层支持对远程数据的交互式探索,并通过快速的数据获取来测试对数据子集的分析。其次,一个库简化了开发新分析算法的过程,使用户可以快速建立新方法的原型并将其部署在HPC环境中。第三,可扩展的运行时系统自动将分析算法映射到任何可用的计算硬件,从而降低了开发缩放算法的复杂性。我们使用来自神经科学的用例演示了我们系统的可用性和性能:万亿级显微镜数据的过滤,注册和可视化。我们使用领导级别的超级计算机Shaheen II评估系统的性能。

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