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Computer-aided diagnosis of lung nodule using gradient tree boosting and Bayesian optimization

机译:利用梯度树增强和贝叶斯优化的计算机辅助诊断肺结节

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摘要

We aimed to evaluate a computer-aided diagnosis (CADx) system for lung nodule classification focussing on (i) usefulness of the conventional CADx system (hand-crafted imaging feature + machine learning algorithm), (ii) comparison between support vector machine (SVM) and gradient tree boosting (XGBoost) as machine learning algorithms, and (iii) effectiveness of parameter optimization using Bayesian optimization and random search. Data on 99 lung nodules (62 lung cancers and 37 benign lung nodules) were included from public databases of CT images. A variant of the local binary pattern was used for calculating a feature vector. SVM or XGBoost was trained using the feature vector and its corresponding label. Tree Parzen Estimator (TPE) was used as Bayesian optimization for parameters of SVM and XGBoost. Random search was done for comparison with TPE. Leave-one-out cross-validation was used for optimizing and evaluating the performance of our CADx system. Performance was evaluated using area under the curve (AUC) of receiver operating characteristic analysis. AUC was calculated 10 times, and its average was obtained. The best averaged AUC of SVM and XGBoost was 0.850 and 0.896, respectively; both were obtained using TPE. XGBoost was generally superior to SVM. Optimal parameters for achieving high AUC were obtained with fewer numbers of trials when using TPE, compared with random search. Bayesian optimization of SVM and XGBoost parameters was more efficient than random search. Based on observer study, AUC values of two board-certified radiologists were 0.898 and 0.822. The results show that diagnostic accuracy of our CADx system was comparable to that of radiologists with respect to classifying lung nodules.
机译:我们旨在评估一种用于肺结节分类的计算机辅助诊断(CADx)系统,重点在于(i)常规CADx系统的实用性(手工成像特征+机器学习算法),(ii)支持向量机(SVM)之间的比较)和梯度树增强(XGBoost)作为机器学习算法,以及(iii)使用贝叶斯优化和随机搜索进行参数优化的有效性。从CT图像的公共数据库中收集了99个肺结节(62个肺癌和37个良性肺结节)的数据。使用局部二进制模式的变体来计算特征向量。使用特征向量及其对应的标签对SVM或XGBoost进行了训练。使用树Parzen估计器(TPE)作为SVM和XGBoost参数的贝叶斯优化。进行了随机搜索以与TPE进行比较。留一法交叉验证用于优化和评估我们的CADx系统的性能。使用接收器工作特性分析的曲线下面积(AUC)评估性能。计算AUC 10次,并获得其平均值。 SVM和XGBoost的最佳平均AUC分别为0.850和0.896;两者均使用TPE获得。 XGBoost通常优于SVM。与随机搜索相比,使用TPE进行试验的次数更少,获得了获得高AUC的最佳参数。支持向量机和XGBoost参数的贝叶斯优化比随机搜索更有效。根据观察者研究,两名经董事会认证的放射科医生的AUC值为0.898和0.822。结果表明,在对肺结节进行分类方面,我们的CADx系统的诊断准确性与放射科医生相当。

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