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Synthetic metabolic computation in a bioluminescence-sensing system

机译:生物发光传感系统中的合成代谢计算

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摘要

Bioluminescence is visible light produced and emitted by living cells using various biological systems (e.g. luxCDABE cassette). Today, this phenomenon is widely exploited in biological research, biotechnology and medical applications as a quantitative technique for the detection of biological signals. However, this technique has mostly been used to detect a single input only. In this work, we re-engineered the complex genetic structure of luxCDABE cassette to build a biological unit that can detect multi-inputs, process the cellular information and report the computation results. We first split the luxCDABE operon into several parts to create a genetic circuit that can compute a soft minimum in living cells. Then, we used the new design to implement an AND logic function with better performance as compared to AND logic functions based on protein-protein interactions. Furthermore, by controlling the reverse reaction of the luxCDABE cassette independently from the forward reaction, we built a comparator with a programmable detection threshold. Finally, we applied the redesigned cassette to build an incoherent feedforward loop that reduced the unwanted crosstalk between stress-responsive promoters (recA, katG). This work demonstrates the construction of genetic circuits that combine regulations of gene expression with metabolic pathways, for sensing and computing in living cells.
机译:生物发光是活细胞使用各种生物系统(例如luxCDABE盒)产生和发射的可见光。如今,这种现象已在生物学研究,生物技术和医学应用中广泛用作检测生物信号的定量技术。但是,该技术主要用于仅检测单个输入。在这项工作中,我们重新设计了luxCDABE盒的复杂遗传结构,以构建一个可以检测多种输入,处理细胞信息并报告计算结果的生物单位。我们首先将luxCDABE操纵子分成几个部分,以创建一个遗传电路,该电路可以计算活细胞中的最小柔度。然后,与基于蛋白质-蛋白质相互作用的AND逻辑功能相比,我们使用新设计来实现具有更好性能的AND逻辑功能。此外,通过独立于正向反应控制luxCDABE盒的反向反应,我们构建了具有可编程检测阈值的比较器。最后,我们应用经过重新设计的盒带构建了一个不连贯的前馈环路,该环路减少了应力响应启动子(recA,katG)之间的不必要的串扰。这项工作演示了遗传电路的构建,该遗传电路将基因表达的规则与代谢途径结合在一起,用于在活细胞中进行感测和计算。

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