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Xanthusbase: adapting wikipedia principles to a model organism database

机译:Xanthusbase:使维基百科原理适应模型生物数据库

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摘要

xanthusBase () is the official model organism database (MOD) for the social bacterium Myxococcus xanthus. In many respects, M.xanthus represents the pioneer model organism (MO) for studying the genetic, biochemical, and mechanistic basis of prokaryotic multicellularity, a topic that has garnered considerable attention due to the significance of biofilms in both basic and applied microbiology research. To facilitate its utility, the design of xanthusBase incorporates open-source software, leveraging the cumulative experience made available through the Generic Model Organism Database (GMOD) project, MediaWiki (), and dictyBase (), to create a MOD that is both highly useful and easily navigable. In addition, we have incorporated a unique Wikipedia-style curation model which exploits the internet's inherent interactivity, thus enabling M.xanthus and other myxobacterial researchers to contribute directly toward the ongoing genome annotation.
机译:xanthusBase()是社交细菌Myxococcus xanthus的官方模型生物数据库(MOD)。在许多方面,黄单胞菌是研究原核多细胞性的遗传,生物化学和机制基础的先驱模型生物(MO),由于生物膜在基础和应用微生物学研究中的重要性,该话题已引起广泛关注。为了促进其实用性,xanthusBase的设计集成了开放源代码软件,从而利用通过通用模型有机体数据库(GMOD)项目,MediaWiki()和dictyBase()获得的累积经验来创建一个非常有用的MOD。且易于导航。此外,我们还采用了独特的Wikipedia风格的策展模型,该模型利用了互联网的固有交互性,从而使黄腐支原体和其他黏细菌研究人员能够直接为正在进行的基因组注释做出贡献。

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