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Start2Fold: a database of hydrogen/deuterium exchange data on protein folding and stability

机译:Start2Fold:有关蛋白质折叠和稳定性的氢/氘交换数据的数据库

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摘要

Proteins fulfil a wide range of tasks in cells; understanding how they fold into complex three-dimensional (3D) structures and how these structures remain stable while retaining sufficient dynamics for functionality is essential for the interpretation of overall protein behaviour. Since the 1950's, solvent exchange-based methods have been the most powerful experimental means to obtain information on the folding and stability of proteins. Considerable expertise and care were required to obtain the resulting datasets, which, despite their importance and intrinsic value, have never been collected, curated and classified. Start2Fold is an openly accessible database () of carefully curated hydrogen/deuterium exchange (HDX) data extracted from the literature that is open for new submissions from the community. The database entries contain (i) information on the proteins investigated and the underlying experimental procedures and (ii) the classification of the residues based on their exchange protection levels, also allowing for the instant visualization of the relevant residue groups on the 3D structures of the corresponding proteins. By providing a clear hierarchical framework for the easy sharing, comparison and (re-)interpretation of HDX data, Start2Fold intends to promote a better understanding of how the protein sequence encodes folding and structure as well as the development of new computational methods predicting protein folding and stability.
机译:蛋白质在细胞中完成各种各样的任务。了解它们如何折叠成复杂的三维(3D)结构以及这些结构如何保持稳定,同时保留足够的功能动力学,这对于解释蛋白质的整体行为至关重要。自1950年代以来,基于溶剂交换的方法一直是获得有关蛋白质折叠和稳定性信息的最强大的实验手段。需要大量的专业知识和精力来获取结果数据集,尽管它们具有重要性和内在价值,但从未被收集,整理和分类。 Start2Fold是一个开放访问的数据库(),其中包含从文献中提取的精心策划的氢/氘交换(HDX)数据,该文献对社区中的新文献开放。数据库条目包含(i)有关所研究蛋白质和基础实验程序的信息,以及(ii)基于残基的交换保护水平进行的残基分类,还可以即时显示3D结构的相关残基组。相应的蛋白质。通过提供清晰的层次结构框架来轻松共享,比较和(重新)解释HDX数据,Start2Fold旨在促进对蛋白质序列如何编码折叠和结构的更好理解,以及开发预测蛋白质折叠的新计算方法和稳定性。

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