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DisGeNET: a comprehensive platform integrating information on human disease-associated genes and variants

机译:DisGeNET:一个综合平台整合有关人类疾病相关基因和变体的信息

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摘要

The information about the genetic basis of human diseases lies at the heart of precision medicine and drug discovery. However, to realize its full potential to support these goals, several problems, such as fragmentation, heterogeneity, availability and different conceptualization of the data must be overcome. To provide the community with a resource free of these hurdles, we have developed DisGeNET (), one of the largest available collections of genes and variants involved in human diseases. DisGeNET integrates data from expert curated repositories, GWAS catalogues, animal models and the scientific literature. DisGeNET data are homogeneously annotated with controlled vocabularies and community-driven ontologies. Additionally, several original metrics are provided to assist the prioritization of genotype–phenotype relationships. The information is accessible through a web interface, a Cytoscape App, an RDF SPARQL endpoint, scripts in several programming languages and an R package. DisGeNET is a versatile platform that can be used for different research purposes including the investigation of the molecular underpinnings of specific human diseases and their comorbidities, the analysis of the properties of disease genes, the generation of hypothesis on drug therapeutic action and drug adverse effects, the validation of computationally predicted disease genes and the evaluation of text-mining methods performance.
机译:有关人类疾病遗传基础的信息是精密医学和药物发现的核心。但是,为了充分发挥其潜力来支持这些目标,必须克服一些问题,例如碎片化,异质性,可用性和数据的不同概念化。为了向社区提供不受这些障碍影响的资源,我们开发了DisGeNET(),它是人类疾病涉及的最大基因和变异体集合之一。 DisGeNET整合了来自专家库,GWAS目录,动物模型和科学文献的数据。 DisGeNET数据使用受控的词汇表和社区驱动的本体进行统一注释。此外,提供了一些原始指标来帮助确定基因型与表型关系的优先级。可通过Web界面,Cytoscape应用程序,RDF SPARQL端点,几种编程语言的脚本和R包来访问该信息。 DisGeNET是一个通用平台,可用于不同的研究目的,包括研究特定人类疾病及其合并症的分子基础,疾病基因特性的分析,关于药物治疗作用和药物不良反应的假设的产生,计算预测的疾病基因的验证和文本挖掘方法性能的评估。

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