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POSTAR2: deciphering the post-transcriptional regulatory logics

机译:POSTAR2:解密转录后的调控逻辑

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摘要

Post-transcriptional regulation of RNAs is critical to the diverse range of cellular processes. The volume of functional genomic data focusing on post-transcriptional regulation logics continues to grow in recent years. In the current database version, POSTAR2 (), we included the following new features and data: updated ∼500 CLIP-seq datasets (∼1200 CLIP-seq datasets in total) from six species, including human, mouse, fly, worm, Arabidopsis and yeast; added a new module ‘Translatome’, which is derived from Ribo-seq datasets and contains ∼36 million open reading frames (ORFs) in the genomes from the six species; updated and unified post-transcriptional regulation and variation data. Finally, we improved web interfaces for searching and visualizing protein–RNA interactions with multi-layer information. Meanwhile, we also merged our CLIPdb database into POSTAR2. POSTAR2 will help researchers investigate the post-transcriptional regulatory logics coordinated by RNA-binding proteins and translational landscape of cellular RNAs.
机译:RNA的转录后调控对于多种细胞过程至关重要。近年来,着重于转录后调控逻辑的功能基因组数据量不断增长。在当前的数据库版本POSTAR2()中,我们包括以下新功能和数据:从六个物种(包括人类,小鼠,苍蝇,蠕虫,拟南芥)更新了约500个CLIP-seq数据集(总计约1200个CLIP-seq数据集)。和酵母;添加了一个新模块“ Translatome”,该模块源自Ribo-seq数据集,并且在来自六个物种的基因组中包含约3600万个开放阅读框(ORF);更新和统一的转录后调控和变异数据。最后,我们改进了Web界面,以搜索和可视化蛋白质-RNA与多层信息的相互作用。同时,我们还将CLIPdb数据库合并到POSTAR2中。 POSTAR2将帮助研究人员研究转录后的调控逻辑,该调控逻辑由RNA结合蛋白和细胞RNA的翻译图景协调。

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