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BRENDA in 2019: a European ELIXIR core data resource

机译:2019年的BRENDA:欧洲ELIXIR核心数据资源

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摘要

The BRENDA enzyme database (), recently appointed ELIXIR Core Data Resource, is the main enzyme and enzyme-ligand information system. The core database provides a comprehensive overview on enzymes. A collection of 4.3 million data for ∼84 000 enzymes manually evaluated and extracted from ∼140 000 primary literature references is combined with information obtained by text and data mining, data integration and prediction algorithms. Supplements comprise disease-related data, protein sequences, 3D structures, predicted enzyme locations and genome annotations. Major developments are a revised ligand summary page and the structure search now including a similarity and isomer search. BKMS-react, an integrated database containing known enzyme-catalyzed reactions, is supplemented with further reactions and improved access to pathway connections. In addition to existing enzyme word maps with graphical information of enzyme specific terms, plant word maps have been developed. They show a graphical overview of terms, e.g. enzyme or plant pathogen information, connected to specific plants. An organism summary page showing all relevant information, e.g. taxonomy and synonyms linked to enzyme data, was implemented. Based on a decision by the IUBMB enzyme task force the enzyme class EC 7 has been established for ‘translocases’, enzymes that catalyze a transport of ions or metabolites across cellular membranes.
机译:BRENDA酶数据库(),最近被任命为ELIXIR核心数据资源,是主要的酶和酶配体信息系统。核心数据库提供了有关酶的全面概述。从约140 000种主要参考文献中手动评估和提取的约840 000种酶的430万数据的集合与通过文本和数据挖掘,数据集成和预测算法获得的信息相结合。补充资料包括与疾病相关的数据,蛋白质序列,3D结构,预测的酶位置和基因组注释。主要发展是修订的配体摘要页面,结构搜索现在包括相似性和异构体搜索。 BKMS-react是一个包含已知酶催化反应的集成数据库,此外还提供了进一步的反应和改进的途径连接途径。除了现有的带有酶特定术语图形信息的酶词图,还开发了植物词图。它们显示了术语的图形概述,例如酶或植物病原体信息,连接到特定植物。显示所有相关信息的生物摘要页面,例如分类法和链接到酶数据的同义词被实施。根据IUBMB酶工作组的决定,已经为“转运酶”建立了EC 7类酶,这种酶催化离子或代谢物在细胞膜上的转运。

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