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Cloud-based relational database for multimodal animal data

机译:基于云的多模式动物数据关系数据库

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摘要

Pre-clinical research builds on a large variety of in vivo and ex vivo tools such as non-invasive imaging, microscopy, and analysis of gene expression. To work efficiently with multimodal data and correlate results across scales, it is of particular importance to have easy access to all data points from different specimen, e.g. the magnetic resonance imaging (MRI) data from different time points, and the post-mortem histology. That requires an efficient data management, which is customizable and designed to relate all applied methods, raw data and analyses to one specific animal. Despite increasing demands to handle such complex data, most pre-clinical labs have not yet established such an electronic database. Here, we present a novel cloud-based relational database for multimodal animal data, which operates on commercial software. We have implemented data fields for various pre-clinical features such as MRI, histology and behaviour. Automated procedures replace manual and recurrent calculations. Pre-set plotting and printing features provide efficient analysis and documentation. The database template is useful for all labs working with laboratory animals and the adaption to specific research projects requires no prior scripting expertise. The database works operating-system independent through the web browser and allows multiple users to work simultaneously. The data entry is monitored and restricted for particular tests according to the user management in order to keep for example users during the experiment blinded for the experimental group. The database improves data accessibility, standardization of data recording and data handling efficiency in pre-clinical research.
机译:临床前研究建立在多种体内和离体工具上,例如非侵入性成像,显微镜检查和基因表达分析。为了有效处理多峰数据并跨尺度关联结果,轻松访问来自不同样本的所有数据点(例如来自不同时间点的磁共振成像(MRI)数据以及验尸组织学。这需要有效的数据管理,该数据管理是可定制的,旨在将所有应用的方法,原始数据和分析与一种特定的动物联系起来。尽管处理此类复杂数据的需求不断增加,但大多数临床前实验室尚未建立此类电子数据库。在这里,我们介绍了一种用于多模式动物数据的新颖的基于云的关系数据库,该数据库在商业软件上运行。我们已经为各种临床前特征(例如MRI,组织学和行为)实现了数据字段。自动化程序取代了手动和循环计算。预设的绘图和打印功能可提供有效的分析和记录。该数据库模板对于使用实验动物的所有实验室都是有用的,并且适应特定的研究项目不需要事先编写脚本的专门知识。该数据库通过Web浏览器独立于操作系统工作,并允许多个用户同时工作。根据用户管理对数据输入进行监视并限制用于特定测试,以使例如用户在实验期间无法进入实验组。该数据库提高了临床前研究的数据可访问性,数据记录的标准化和数据处理效率。

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