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Turning Oscillations Into Opportunities: Lessons from a Bacterial Decision Gate

机译:将振荡转化为机遇:细菌决策之门的教训

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摘要

Sporulation vs. competence provides a prototypic example of collective cell fate determination. The decision is performed by the action of three modules: 1) A stochastic competence switch whose transition probability is regulated by population density, population stress and cell stress. 2) A sporulation timer whose clock rate is regulated by cell stress and population stress. 3) A decision gate that is coupled to the timer via a special repressilator-like loop. We show that the distinct circuit architecture of this gate leads to special dynamics and noise management characteristics: The gate opens a time-window of opportunity for competence transitions during which it generates oscillations that are turned into a chain of transition opportunities – each oscillation opens a short interval with high transition probability. The special architecture of the gate also leads to filtering of external noise and robustness against internal noise and variations in the circuit parameters.
机译:孢子形成与能力提供了集体细胞命运决定的原型例子。该决定是通过三个模块的作用来执行的:1)随机能力转换,其转换概率受人口密度,人口压力和细胞压力调节。 2)孢子形成计时器,其时钟速率受细胞压力和种群压力调节。 3)决策门通过特殊的类似于再加压器的环路耦合到计时器。我们证明了该闸门的独特电路架构带来了特殊的动态特性和噪声管理特性:闸门打开了能力转变的机会窗口,在此期间,它产生了振荡,转变为一系列转变机会–每个振荡都打开了一个间隔短,过渡概率高。门的特殊架构还导致对外部噪声的滤波以及针对内部噪声和电路参数变化的鲁棒性。

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