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Automated video-mosaicking approach for confocal microscopic imaging in vivo: an approach to address challenges in imaging living tissue and extend field of view

机译:用于体内共聚焦显微镜成像的自动视频拼接方法:一种解决活体组织成像挑战并扩展视野的方法

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摘要

We describe a computer vision-based mosaicking method for in vivo videos of reflectance confocal microscopy (RCM). RCM is a microscopic imaging technique, which enables the users to rapidly examine tissue in vivo. Providing resolution at cellular-level morphology, RCM imaging combined with mosaicking has shown to be highly sensitive and specific for non-invasively guiding skin cancer diagnosis. However, current RCM mosaicking techniques with existing microscopes have been limited to two-dimensional sequences of individual still images, acquired in a highly controlled manner, and along a specific predefined raster path, covering a limited area. The recent advent of smaller handheld microscopes is enabling acquisition of videos, acquired in a relatively uncontrolled manner and along an ad-hoc arbitrarily free-form, non-rastered path. Mosaicking of video-images (video-mosaicking) is necessary to display large areas of tissue. Our video-mosaicking methods addresses this need. The method can handle unique challenges encountered during video capture such as motion blur artifacts due to rapid motion of the microscope over the imaged area, warping in frames due to changes in contact angle and varying resolution with depth. We present test examples of video-mosaics of melanoma and non-melanoma skin cancers, to demonstrate potential clinical utility.
机译:我们描述了一种基于计算机视觉的镶嵌方法,用于反射共聚焦显微镜(RCM)的体内视频。 RCM是一种显微成像技术,使用户能够在体内快速检查组织。 RCM成像结合镶嵌技术可提供细胞水平形态学的分辨率,对非侵入性引导皮肤癌诊断非常敏感且具有特异性。但是,当前使用现有显微镜的RCM镶嵌技术仅限于以高度受控的方式并沿着特定的预定光栅路径(覆盖有限区域)获取的单个静止图像的二维序列。小型手持式显微镜的最新出现是能够以相对不受控制的方式并沿着任意任意自由形式的非光栅路径来采集视频。视频图像的拼接(视频拼接)对于显示大面积组织是必需的。我们的视频马赛克方法可以满足这一需求。该方法可以处理在视频捕获过程中遇到的独特挑战,例如由于显微镜在成像区域上的快速运动导致的运动模糊伪像,由于接触角的变化以及随深度变化的分辨率而导致的帧变形。我们介绍了黑色素瘤和非黑色素瘤皮肤癌的视频马赛克测试实例,以证明潜在的临床效用。

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