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Periodic Quasi-periodic and Chaotic Dynamics in Simple Gene Elements with Time Delays

机译:具有时间延迟的简单基因元素的周期性拟周期性和混沌动力学

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摘要

Regulatory gene circuit motifs play crucial roles in performing and maintaining vital cellular functions. Frequently, theoretical studies of gene circuits focus on steady-state behaviors and do not include time delays. In this study, the inclusion of time delays is shown to entirely change the time-dependent dynamics for even the simplest possible circuits with one and two gene elements with self and cross regulations. These elements can give rise to rich behaviors including periodic, quasi-periodic, weak chaotic, strong chaotic and intermittent dynamics. We introduce a special power-spectrum-based method to characterize and discriminate these dynamical modes quantitatively. Our simulation results suggest that, while a single negative feedback loop of either one- or two-gene element can only have periodic dynamics, the elements with two positiveegative feedback loops are the minimalist elements to have chaotic dynamics. These elements typically have one negative feedback loop that generates oscillations, and another unit that allows frequent switches among multiple steady states or between oscillatory and non-oscillatory dynamics. Possible dynamical features of several simple one- and two-gene elements are presented in details. Discussion is presented for possible roles of the chaotic behavior in the robustness of cellular functions and diseases, for example, in the context of cancer.
机译:调节基因电路基序在执行和维持重要的细胞功能中起关键作用。通常,基因电路的理论研究关注稳态行为,而不包括时间延迟。在这项研究中,包括时间延迟在内,甚至可以完全改变具有一个和两个具有自律和交叉调控基因元素的最简单电路的时间相关动力学。这些元素可以引起丰富的行为,包括周期性的,准周期性的,弱混沌的,强混沌的和间歇的动力学。我们引入了一种基于功率谱的特殊方法来定量表征和区分这些动力学模式。我们的仿真结果表明,虽然一个或两个基因元素的单个负反馈回路只能具有周期性动力学,但是具有两个正/负反馈回路的元素是具有混沌动力学的极简主义元素。这些元件通常具有一个产生振荡的负反馈环路,以及另一个允许在多个稳态之间或在振荡和非振荡动态之间频繁切换的单元。详细介绍了几个简单的一基因和二基因元素的可能动力学特征。讨论了混沌行为在细胞功能和疾病的鲁棒性中可能发挥的作用,例如在癌症的背景下。

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