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Identification of potential gene targets in systemic vasculitis using DNA microarray analysis

机译:使用DNA芯片分析鉴定系统性血管炎中潜在的基因靶标

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摘要

The present study aimed to identify the involvement of critical genes in systemic vasculitis, to gain an improved understanding of the molecular circuity and to investigate novel potential gene targets for systemic vasculitis treatment. The dual-color cDNA microarray data of , consisting of peripheral mononuclear blood cell specimens from 13 patients with systemic vasculitis and 16 healthy controls, was downloaded from the Gene Expression Omnibus database. Differentially expressed genes (DEGs) were screened in systemic vasculitis compared with controls using BRB ArrayTools, followed by the construction of a protein-protein interaction (PPI) network using the clusterProfiler package, and significant functional interaction (FI) module selection. Furthermore, transcriptional factors (TFs) among the identified DEGs were predicted and a transcriptional regulation network was constructed. A total of 173 up- and 93 downregulated genes were identified, which were mainly associated with immune response pathways. FBJ murine osteosarcoma viral oncogene homolog (FOS), ubiquitin B (UBB), signal transducer and activator of transcription 1 (STAT1) and MX dynamin-like GTPase 1 (MX1) were identified as hub proteins in the PPI network. Furthermore, UBB, FOS, and STAT1 were hub proteins in the three identified FI modules, respectively. In total, nine TFs were predicted among the DEGs. Of the DEGs that were predicted to be TFs, STAT1, v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B (MAFB) and tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein Z (YWHAZ), which interacted with each other, were identified to regulate further DEGs as target genes. Various genes, including FOS, UBB, MX1, STAT1, MAFB, and YWHAZ may be potential targets useful for the treatment of systemic vasculitis.
机译:本研究旨在确定系统性血管炎中关键基因的参与,以增进对分子improved回的了解,并研究用于系统性血管炎治疗的新型潜在基因靶标。从Gene Expression Omnibus数据库下载了双色cDNA微阵列数据,该数据由来自13位系统性血管炎患者和16位健康对照的外周单个核血细胞样本组成。与对照组相比,使用BRB ArrayTools在系统性血管炎中筛选了差异表达基因(DEG),然后使用clusterProfiler程序包构建了蛋白质-蛋白质相互作用(PPI)网络,并选择了重要的功能相互作用(FI)模块。此外,预测到的DEGs之间的转录因子(TFs)并构建了转录调控网络。总共鉴定了173个上调和93个下调的基因,这些基因主要与免疫应答途径相关。 FBJ鼠骨肉瘤病毒癌基因同源物(FOS),泛素B(UBB),信号转导和转录激活因子1(STAT1)和MX动力蛋白样GTPase 1(MX1)被确定为PPI网络中的中枢蛋白。此外,UBB,FOS和STAT1分别是三个已鉴定FI模块中的中枢蛋白。预计在DEG中总共有9个TF。在预测为TF的DEG中,将STAT1,v-maf禽肌腱膜纤维肉瘤癌基因同源物B(MAFB)和酪氨酸3-单加氧酶/色氨酸5-单加氧酶激活蛋白Z(YWHAZ)鉴定为进一步调节DEGs作为靶基因。包括FOS,UBB,MX1,STAT1,MAFB和 YWHAZ 在内的各种基因可能是可用于治疗系统性血管炎的潜在靶标。

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