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Multiscale analytic continuation approach to nanosystem simulation: Applications to virus electrostatics

机译:纳米系统模拟的多尺度分析延续方法:在病毒静电学中的应用

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摘要

Electrostatic effects in nanosystems are understood via a physical picture built on their multiscale character and the distinct behavior of mobile ions versus charge groups fixed to the nanostructure. The Poisson–Boltzmann equation is nondimensionalized to introduce a factor λ that measures the density of mobile ion charge versus that due to fixed charges; the diffusive smearing and volume exclusion effects of the former tend to diminish its value relative to that from the fixed charges. We introduce the ratio σ of the average nearest-neighbor atom distance to the characteristic size of the features of the nanostructure of interest (e.g., a viral capsomer). We show that a unified treatment (i.e., λ∝σ) and a perturbation expansion around σ=0 yields, through analytic continuation, an approximation to the electrostatic potential of high accuracy and computational efficiency. The approach was analyzed via Padé approximants and demonstrated on viral system electrostatics; it can be generalized to accommodate extended Poisson-Boltzmann models, and has wider applicability to nonequilibrium electrodiffusion and many-particle quantum systems.
机译:纳米系统中的静电效应可通过基于其多尺度特征以及可移动离子与固定在纳米结构上的电荷基团不同行为的物理图像来理解。 Poisson-Boltzmann方程是无量纲的,因此引入了一个系数λ,该系数测量的是可移动离子电荷密度与固定电荷密度的乘积。与固定电荷相比,前者的弥散涂抹和体积排阻作用往往会降低其值。我们介绍了平均最近邻居原子距离与感兴趣的纳米结构特征(例如病毒衣壳)的特征尺寸的比值σ。我们表明,通过分析连续性,统一的处理(即λ∝σ)和σ= 0附近的扰动扩展产生了高精度和计算效率近似的静电势。该方法已通过Padé近似值进行了分析,并在病毒系统静电学上得到了证明。它可以被普遍化以适应扩展的Poisson-Boltzmann模型,并且对非平衡电扩散和多粒子量子系统具有更广泛的适用性。

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