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Analyzing gene expression profiles in dilated cardiomyopathy viabioinformatics methods

机译:通过分析基因表达谱在扩张型心肌病生物信息学方法

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摘要

Dilated cardiomyopathy (DCM) is characterized by ventricular dilatation, and it is a common cause of heart failure and cardiac transplantation. This study aimed to explore potential DCM-related genes and their underlying regulatory mechanism using methods of bioinformatics. The gene expression profiles of were downloaded from Gene Expression Omnibus database, including 15 normal samples and 13 DCM samples. The differentially expressed genes (DEGs) were identified between normal and DCM samples using Limma package in R language. Pathway enrichment analysis of DEGs was then performed. Meanwhile, the potential transcription factors (TFs) and microRNAs (miRNAs) of these DEGs were predicted based on their binding sequences. In addition, DEGs were mapped to the cMap database to find the potential small molecule drugs. A total of 4777 genes were identified as DEGs by comparing gene expression profiles between DCM and control samples. DEGs were significantly enriched in 26 pathways, such as lymphocyte TarBase pathway and androgen receptor signaling pathway. Furthermore, potential TFs (SP1, LEF1, and NFAT) were identified, as well as potential miRNAs (miR-9, miR-200 family, and miR-30 family). Additionally, small molecules like isoflupredone and trihexyphenidyl were found to be potential therapeutic drugs for DCM. The identified DEGs (PRSS12 and FOXG1), potential TFs, aswell as potential miRNAs, might be involved in DCM.
机译:扩张型心肌病(DCM)的特征是心室扩张,是心力衰竭和心脏移植的常见原因。这项研究旨在利用生物信息学方法探索潜在的DCM相关基因及其潜在的调控机制。可从Gene Expression Omnibus数据库下载的基因表达谱,包括15个正常样品和13个DCM样品。使用R语言的Limma软件包在正常样本与DCM样本之间鉴定了差异表达基因(DEG)。然后进行DEG的途径富集分析。同时,基于它们的结合序列预测了这些DEG的潜在转录因子(TF)和微小RNA(miRNA)。此外,将DEGs映射到cMap数据库中以查找潜在的小分子药物。通过比较DCM和对照样品之间的基因表达谱,总共鉴定出4777个基因为DEG。 DEG显着富集了26种途径,例如淋巴细胞TarBase途径和雄激素受体信号传导途径。此外,确定了潜在的TF(SP1,LEF1和NFAT),以及潜在的miRNA(miR-9,miR-200家族和miR-30家族)。另外,发现小分子如异氟哌啶酮和三己基哌啶基是DCM的潜在治疗药物。已识别的DEG(PRSS12和FOXG1),潜在的TF为以及潜在的miRNA,可能与DCM有关。

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