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Datasets generated by shotgun sequencing of metagenomic libraries of the guajataca water reservoir

机译:瓜加塔卡水库宏基因组文库的shot弹枪测序产生的数据集

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摘要

The Guajataca Water Reservoir (GWR) was constructed for irrigation and to bring potable water to the northwestern region of Puerto Rico. The generation of DNA sequencing data from aquatic bodies (AB) using culture-independent approaches allows the investigation of the total microbial diversity as well as the potential anthropogenic impact. Metagenomic libraries were constructed for two GWR sampling sites and genomic information access through shotgun sequencing. After removing the bacterial host cell genome and the library fosmid sequences, the environmental genome was processed through Rapid Annotation using Subsystems Technology for Metagenomes (MG-RAST). The sequences consisted primarily of bacteria (95.70%), followed by viruses (2.94%), other sequences (0.28%) and eukaryote (0.09%). The most abundant species were Enterobacter cloacae (31%), Enterobacter sp. 638 (20%), Enterobacter cancerogenus (10%) and Escherichia coli (11%). Furthermore, the subsystem data showed that 13% of the genes belong to carbohydrates functionality, 12% to clustering-based-subsystems and another 9% related to virulence-disease-and-defense (out of which 8% pertain to genes of antibiotic resistance and toxic compounds). This unique data input will serve as a baseline to a better understanding not only the microbial communities present in the AB, but also the microbial activities with potential application in biotechnological and biomedical fields.
机译:瓜亚塔卡水库(GWR)的目的是灌溉和将饮用水带到波多黎各的西北地区。使用与培养无关的方法从水生生物(AB)生成DNA测序数据可以研究总微生物多样性以及潜在的人为影响。为两个GWR采样位点构建了元基因组库,并通过shot弹枪测序获得了基因组信息。去除细菌宿主细胞基因组和文库质粒序列后,使用元基因组子系统技术(MG-RAST)通过快速注释处理环境基因组。这些序列主要由细菌(95.70%)组成,其次是病毒(2.94%),其他序列(0.28%)和真核生物(0.09%)。最丰富的物种是阴沟肠杆菌(31%),Enterobacter sp.。 638(20%),致癌肠杆菌(10%)和大肠杆菌(11%)。此外,子系统数据显示,有13%的基因属于碳水化合物功能,有12%的基因属于基于聚类的子系统,另外9%的基因与毒力,疾病和防御有关(其中8%与抗生素抗性基因有关)和有毒化合物)。这种独特的数据输入将作为一个基线,不仅可以更好地了解AB中存在的微生物群落,而且可以更好地了解在生物技术和生物医学领域中可能应用的微生物活动。

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