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Formamide reaction network in gas phase and solution via a unified theoretical approach: Toward a reconciliation of different prebiotic scenarios

机译:气相和溶液中的甲酰胺反应网络通过统一的理论方法:调和不同的益生元场景

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摘要

Increasing experimental and theoretical evidence points to formamide as a possible hub in the complex network of prebiotic chemical reactions leading from simple precursors like H2, H2O, N2, NH3, CO, and CO2 to key biological molecules like proteins, nucleic acids, and sugars. We present an in-depth computational study of the formation and decomposition reaction channels of formamide by means of ab initio molecular dynamics. To this aim we introduce a new theoretical method combining the metadynamics sampling scheme with a general purpose topological formulation of collective variables able to track a wide range of different reaction mechanisms. Our approach is flexible enough to discover multiple pathways and intermediates starting from minimal insight on the systems, and it allows passing in a seamless way from reactions in gas phase to reactions in liquid phase, with the solvent active role fully taken into account. We obtain crucial new insight into the interplay of the different formamide reaction channels and into environment effects on pathways and barriers. In particular, our results indicate a similar stability of formamide and hydrogen cyanide in solution as well as their relatively facile interconversion, thus reconciling experiments and theory and, possibly, two different and competing prebiotic scenarios. Moreover, although not explicitly sought, formic acid/ammonium formate is produced as an important formamide decomposition byproduct in solution.
机译:越来越多的实验和理论证据表明,甲酰胺可能是益生元化学反应复杂网络中可能的枢纽,其源于简单的前体(例如H2,H2O,N2,NH3,CO和CO2)到关键的生物分子(例如蛋白质,核酸和糖)。我们通过从头算的分子动力学,对甲酰胺的形成和分解反应通道进行了深入的计算研究。为此,我们引入了一种新的理论方法,该方法将元动力学采样方案与能够跟踪各种不同反应机理的集体变量的通用拓扑表示相结合。我们的方法足够灵活,可以从对系统的最少了解开始发现多种途径和中间体,并且它可以无缝地从气相反应过渡到液相反应,并充分考虑了溶剂的活性。我们获得了关于不同甲酰胺反应通道之间相互作用以及环境对途径和屏障影响的重要新见解。尤其是,我们的结果表明,甲酰胺和氰化氢在溶液中具有相似的稳定性,并且它们的转换相对较容易,因此使实验和理论以及可能的两种不同且相互竞争的益生元情景相互协调。此外,尽管未明确寻求,但甲酸/甲酸铵是溶液中重要的甲酰胺分解副产物。

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