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From the Cover: Real-time observations of single bacteriophage λ DNA ejections in vitro

机译:从封面:实时观察单个噬菌体λDNA的体外喷射

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摘要

The physical, chemical, and structural features of bacteriophage genome release have been the subject of much recent attention. Many theoretical and experimental studies have centered on the internal forces driving the ejection process. Recently, Mangenot et al. [Mangenot S, Hochrein M, Rädler J, Letellier L (2005) Curr Biol 15:430–435.] reported fluorescence microscopy of phage T5 ejections, which proceeded stepwise between DNA nicks, reaching a translocation speed of 75 kbp/s or higher. It is still unknown how high the speed actually is. This paper reports real-time measurements of ejection from phage λ, revealing how the speed depends on key physical parameters such as genome length and ionic state of the buffer. Except for a pause before DNA is finally released, the entire 48.5-kbp genome is translocated in ≈1.5 s without interruption, reaching a speed of 60 kbp/s. The process gives insights particularly into the effects of two parameters: a shorter genome length results in lower speed but a shorter total time, and the presence of divalent magnesium ions (replacing sodium) reduces the pressure, increasing ejection time to 8–11 s. Pressure caused by DNA–DNA interactions within the head affects the initiation of ejection, but the close packing is also the dominant source of friction: more tightly packed phages initiate ejection earlier, but with a lower initial speed. The details of ejection revealed in this study are probably generic features of DNA translocation in bacteriophages and have implications for the dynamics of DNA in other biological systems.
机译:噬菌体基因组释放的物理,化学和结构特征已成为近期关注的主题。许多理论和实验研究都集中在驱动弹射过程的内力上。最近,Mangenot等。 [Mangenot S,Hochrein M,RädlerJ,Letellier L(2005)Curr Biol 15:430–435。]报告了噬菌体T5喷射的荧光显微镜检查,在DNA缺口之间逐步进行,达到了75 kbp / s或更高的转运速度。 。实际速度有多高仍是未知的。本文报道了从噬菌体λ喷射的实时测量,揭示了速度如何取决于关键的物理参数,例如基因组长度和缓冲液的离子状态。除了在DNA最终释放之前的停顿外,整个48.5-kbp基因组在≈1.5s内无中断地移位,达到60 kbp / s的速度。该过程尤其提供了对两个参数的影响的见解:基因组长度越短,速度越慢,但总时间越短;二价镁离子(取代钠)的存在降低了压力,使射血时间增加了8-11 s。头部内由DNA-DNA相互作用引起的压力影响喷射的开始,但是紧密堆积也是摩擦的主要来源:紧密堆积的噬菌体较早开始喷射,但是初始速度较低。这项研究揭示的弹射细节可能是噬菌体中DNA易位的一般特征,并且对其他生物系统中DNA的动力学有影响。

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