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Tension and Robustness in Multitasking Cellular Networks

机译:多任务蜂窝网络中的张力和鲁棒性

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摘要

Cellular networks multitask by exhibiting distinct, context-dependent dynamics. However, network states (parameters) that generate a particular dynamic are often sub-optimal for others, defining a source of “tension” between them. Though multitasking is pervasive, it is not clear where tension arises, what consequences it has, and how it is resolved. We developed a generic computational framework to examine the source and consequences of tension between pairs of dynamics exhibited by the well-studied RB-E2F switch regulating cell cycle entry. We found that tension arose from task-dependent shifts in parameters associated with network modules. Although parameter sets common to distinct dynamics did exist, tension reduced both their accessibility and resilience to perturbation, indicating a trade-off between “one-size-fits-all” solutions and robustness. With high tension, robustness can be preserved by dynamic shifting of modules, enabling the network to toggle between tasks, and by increasing network complexity, in this case by gene duplication. We propose that tension is a general constraint on the architecture and operation of multitasking biological networks. To this end, our work provides a framework to quantify the extent of tension between any network dynamics and how it affects network robustness. Such analysis would suggest new ways to interfere with network elements to elucidate the design principles of cellular networks.
机译:蜂窝网络通过展现独特的,依赖于上下文的动态特性来实现多任务处理。但是,产生特定动态的网络状态(参数)对于其他状态通常不是最佳的,从而在它们之间定义了“张力”的来源。尽管多任务处理无处不在,但不清楚在哪里出现紧张局势,产生什么后果以及如何解决。我们开发了一个通用的计算框架,以研究经过深入研究的调节细胞周期进入的RB-E2F开关所展现的动力学对之间的张力的来源和后果。我们发现,紧张是由与网络模块相关的参数中与任务有关的转变引起的。尽管确实存在不同动力学通用的参数集,但张力降低了它们的可及性和抗扰性,这表明在“一刀切”的解决方案和鲁棒性之间进行了权衡。在高张力下,可以通过动态移动模块,使网络在任务之间切换以及通过增加网络复杂度(在这种情况下是通过基因复制)来保持鲁棒性。我们建议紧张是多任务生物网络的体系结构和操作的一般约束。为此,我们的工作提供了一个框架,可以量化任何网络动态之间的紧张程度以及它如何影响网络的健壮性。这种分析将提出新的方式来干扰网络元素,以阐明蜂窝网络的设计原理。

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