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Draft genome sequence of Paenibacillus strain LK1 a phytohormone producing bacterium

机译:产生植物激素的细菌Paenibacillus LK1菌株的基因组序列草案

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摘要

A high-quality draft genome sequence of a multi-antibiotic resistant strain, Paenibacillus strain LK1 isolated from the rhizosphere of Auricularia auricular is described. Strain LK1 produced several types of phytohormones, which included Indole-3-acetic acid (IAA) and Zeatin. Phylogenetic analysis of the 16S rRNA gene of strain LK1 showed a close relationship to P. taichungensis and P. pabuli (99% gene sequence similarity). The genome size of strain LK1 was estimated to be 7.16 Mb that consisted of 82 contigs contained in 49 scaffolds. The G + C content of the genome was 45.63% and it encoded 6499 genes, 115 pseudo genes, 8 rRNAs, 33 tRNAs, and 4 ncRNAs, based on the Prokaryotic Genome Annotation Pipeline (PGAP). Further analysis of the genome of strain LK1 identified 16 genes encoding monooxygenase and six genes encoding cytochrome P450, which may be potentially involved in zeatin biosynthesis. The draft whole genome sequence and annotation of strain LK1 has been deposited at DDBJ/EMBL/GenBank under the accession number ().
机译:描述了一种高抗药性的基因组序列序列,该菌株具有多重抗药性,从耳廓根际的根际分离出的Paenibacillus菌株LK1。 LK1菌株产生几种植物激素,其中包括吲哚-3-乙酸(IAA)和玉米蛋白。对菌株LK1的16S rRNA基因的系统进化分析表明,它与台中疫霉和帕布勒霉(P. pabuli)密切相关(99%的基因序列相似性)。 LK1菌株的基因组大小估计为7.16 Mb,由49个支架中包含的82个重叠群组成。基于原核基因组注释管道(PGAP),基因组的G + C含量为45.63%,编码6499个基因,115个假基因,8个rRNA,33个tRNA和4个ncRNA。对菌株LK1的基因组进行进一步分析,确定了16个编码单加氧酶的基因和6个编码细胞色素P450的基因,这可能与玉米素的生物合成有关。菌株LK1的全基因组序列草图和注释已保存在DDBJ / EMBL / GenBank中,登录号为。

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