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Toward Multiscale Models of Cyanobacterial Growth: A Modular Approach

机译:建立蓝细菌生长的多尺度模型:一种模块化方法

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摘要

Oxygenic photosynthesis dominates global primary productivity ever since its evolution more than three billion years ago. While many aspects of phototrophic growth are well understood, it remains a considerable challenge to elucidate the manifold dependencies and interconnections between the diverse cellular processes that together facilitate the synthesis of new cells. Phototrophic growth involves the coordinated action of several layers of cellular functioning, ranging from the photosynthetic light reactions and the electron transport chain, to carbon-concentrating mechanisms and the assimilation of inorganic carbon. It requires the synthesis of new building blocks by cellular metabolism, protection against excessive light, as well as diurnal regulation by a circadian clock and the orchestration of gene expression and cell division. Computational modeling allows us to quantitatively describe these cellular functions and processes relevant for phototrophic growth. As yet, however, computational models are mostly confined to the inner workings of individual cellular processes, rather than describing the manifold interactions between them in the context of a living cell. Using cyanobacteria as model organisms, this contribution seeks to summarize existing computational models that are relevant to describe phototrophic growth and seeks to outline their interactions and dependencies. Our ultimate aim is to understand cellular functioning and growth as the outcome of a coordinated operation of diverse yet interconnected cellular processes.
机译:自从其三十亿多年前的发展以来,光合光合作用就一直主导着全球主要生产力。尽管光养生长的许多方面已被很好地理解,但阐明各种细胞过程之间的多种依存关系和相互联系仍然在一起,这仍然是一个巨大的挑战,这些共同促进新细胞的合成。光合营养的生长涉及细胞功能的几层的协调作用,从光合作用的光反应和电子传输链到碳富集机制和无机碳的同化。它需要通过细胞代谢合成新的组成部分,防止过多的光照,以及通过昼夜节律的昼夜调节以及基因表达和细胞分裂的编排。计算建模使我们能够定量描述与光养生长有关的这些细胞功能和过程。然而,到目前为止,计算模型主要限于单个细胞过程的内部工作,而不是描述在活细胞的情况下它们之间的多重相互作用。使用蓝细菌作为模型生物,此贡献旨在总结与描述光养生长有关的现有计算模型,并概述其相互作用和依赖性。我们的最终目标是将细胞功能和生长理解为多种多样但相互联系的细胞过程协调运行的结果。

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