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Analysis of Litter Size and Average Litter Weight in Pigs Using a Recursive Model

机译:递归模型分析猪的产仔量和平均产仔量

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摘要

An analysis of litter size and average piglet weight at birth in Landrace and Yorkshire using a standard two-trait mixed model (SMM) and a recursive mixed model (RMM) is presented. The RMM establishes a one-way link from litter size to average piglet weight. It is shown that there is a one-to-one correspondence between the parameters of SMM and RMM and that they generate equivalent likelihoods. As parameterized in this work, the RMM tests for the presence of a recursive relationship between additive genetic values, permanent environmental effects, and specific environmental effects of litter size, on average piglet weight. The equivalent standard mixed model tests whether or not the covariance matrices of the random effects have a diagonal structure. In Landrace, posterior predictive model checking supports a model without any form of recursion or, alternatively, a SMM with diagonal covariance matrices of the three random effects. In Yorkshire, the same criterion favors a model with recursion at the level of specific environmental effects only, or, in terms of the SMM, the association between traits is shown to be exclusively due to an environmental (negative) correlation. It is argued that the choice between a SMM or a RMM should be guided by the availability of software, by ease of interpretation, or by the need to test a particular theory or hypothesis that may best be formulated under one parameterization and not the other.
机译:提出了使用标准的两性混合模型(SMM)和递归混合模型(RMM)对Landrace和Yorkshire产仔数和平均仔猪体重进行分析。 RMM建立了从窝产仔数到平均仔猪体重的单向链接。结果表明,SMM和RMM的参数之间存在一一对应的关系,并且它们会产生相等的可能性。根据这项工作的参数,RMM测试了平均仔猪体重上附加遗传值,永久环境影响和垫料尺寸的特定环境影响之间是否存在递归关系。等效标准混合模型测试随机效应的协方差矩阵是否具有对角线结构。在Landrace中,后验预测模型检查支持的模型没有任何形式的递归,或者支持具有三个随机效应的对角协方差矩阵的SMM。在约克郡,相同的标准仅支持具有特定环境影响级别的递归模型,或者就SMM而言,性状之间的关联仅由于环境(负)相关而显示。有人认为,SMM或RMM之间的选择应由软件的可用性,易于解释或需要测试特定的理论或假设(最好在一个参数化而不是在另一个参数化下制定)来指导。

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