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Mapping Iterative Medical Imaging Algorithm on Cell Accelerator

机译:细胞加速器上的映射迭代医学成像算法

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摘要

Algebraic reconstruction techniques require about half the number of projections as that of Fourier backprojection methods, which makes these methods safer in terms of required radiation dose. Algebraic reconstruction technique (ART) and its variant OS-SART (ordered subset simultaneous ART) are techniques that provide faster convergence with comparatively good image quality. However, the prohibitively long processing time of these techniques prevents their adoption in commercial CT machines. Parallel computing is one solution to this problem. With the advent of heterogeneous multicore architectures that exploit data parallel applications, medical imaging algorithms such as OS-SART can be studied to produce increased performance. In this paper, we map OS-SART on cell broadband engine (Cell BE). We effectively use the architectural features of Cell BE to provide an efficient mapping. The Cell BE consists of one powerPC processor element (PPE) and eight SIMD coprocessors known as synergetic processor elements (SPEs). The limited memory storage on each of the SPEs makes the mapping challenging. Therefore, we present optimization techniques to efficiently map the algorithm on the Cell BE for improved performance over CPU version. We compare the performance of our proposed algorithm on Cell BE to that of Sun Fire ×4600, a shared memory machine. The Cell BE is five times faster than AMD Opteron dual-core processor. The speedup of the algorithm on Cell BE increases with the increase in the number of SPEs. We also experiment with various parameters, such as number of subsets, number of processing elements, and number of DMA transfers between main memory and local memory, that impact the performance of the algorithm.
机译:代数重建技术所需的投影数量约为傅立叶反投影方法的一半,这使这些方法在所需的辐射剂量方面更安全。代数重建技术(ART)及其变体OS-SART(有序子集同时ART)是可提供更快收敛和相对较好图像质量的技术。但是,这些技术的处理时间过长,阻碍了它们在商用CT机中的采用。并行计算是解决此问题的一种方法。随着利用数据并行应用程序的异构多核体系结构的出现,可以研究诸如OS-SART的医学成像算法以提高性能。在本文中,我们将OS-SART映射到蜂窝宽带引擎(Cell BE)上。我们有效地使用Cell BE的架构功能来提供有效的映射。单元BE包含一个powerPC处理器元件(PPE)和八个SIMD协处理器,称为协同处理器元件(SPE)。每个SPE上有限的内存存储使映射具有挑战性。因此,我们提出了一些优化技术,可以在Cell BE上有效地映射算法,以提高CPU版本的性能。我们将我们在Cell BE上提出的算法与共享存储机器Sun Fire×4600的性能进行了比较。 Cell BE比AMD Opteron双核处理器快五倍。随着SPE数量的增加,Cell BE上算法的速度也随之提高。我们还尝试了各种参数,例如子集数量,处理元素数量以及主内存和本地内存之间的DMA传输数量,这些参数会影响算法的性能。

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