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Application of Symmetry Adapted Function Method for Three-Dimensional Reconstruction of Octahedral Biological Macromolecules

机译:对称自适应函数法在八面体生物大分子三维重构中的应用

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摘要

A method for three-dimensional (3D) reconstruction of macromolecule assembles, that is, octahedral symmetrical adapted functions (OSAFs) method, was introduced in this paper and a series of formulations for reconstruction by OSAF method were derived. To verify the feasibility and advantages of the method, two octahedral symmetrical macromolecules, that is, heat shock protein Degp24 and the Red-cell L Ferritin, were utilized as examples to implement reconstruction by the OSAF method. The schedule for simulation was designed as follows: 2000 random orientated projections of single particles with predefined Euler angles and centers of origins were generated, then different levels of noises that is signal-to-noise ratio (S/N) = 0.1, 0.5, and 0.8 were added. The structures reconstructed by the OSAF method were in good agreement with the standard models and the relative errors of the structures reconstructed by the OSAF method to standard structures were very little even for high level noise. The facts mentioned above account for that the OSAF method is feasible and efficient approach to reconstruct structures of macromolecules and have ability to suppress the influence of noise.
机译:介绍了一种用于大分子组装体的三维重建的方法,即八面体对称适应函数(OSAFs)方法,并推导了一系列用OSAF方法进行重建的公式。为了验证该方法的可行性和优势,以两个八面体对称大分子即热激蛋白Degp24和红细胞L铁蛋白为例,通过OSAF方法进行了重建。仿真时间表的设计如下:生成了具有预定义的Euler角和原点中心的2000个随机定向的单个粒子投影,然后以信噪比(S / N)= 0.1、0.5,和0.8添加。通过OSAF方法重建的结构与标准模型吻合良好,即使对于高电平噪声,通过OSAF方法重建的结构与标准结构的相对误差也很小。上述事实说明,OSAF方法是重建大分子结构的可行且有效的方法,并且具有抑制噪声影响的能力。

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